Rful006608.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:6150181-6151682[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.092 42 5.2 0.1 25 49 86 110 78 113 0.73 2 13 0.059 27 5.8 0.2 21 45 110 134 106 137 0.90 3 13 0.12 53 4.9 0.1 21 46 138 163 134 166 0.85 4 13 0.079 36 5.4 0.0 21 45 166 190 164 196 0.86 5 13 0.0072 3.3 8.8 0.0 22 46 195 219 191 225 0.84 6 13 0.18 81 4.3 0.0 21 45 222 246 219 254 0.86 7 13 4.7 2.1e+03 -0.2 0.0 21 34 250 263 246 277 0.69 8 13 0.14 64 4.6 0.0 19 52 281 314 274 316 0.75 9 13 0.65 3e+02 2.5 1.7 21 46 311 336 307 342 0.78 10 13 0.22 1e+02 4.0 0.2 17 45 336 363 332 366 0.76 11 13 0.048 22 6.1 0.0 21 45 367 391 359 398 0.88 12 13 2 9e+02 0.9 0.1 22 45 396 419 392 427 0.86 13 13 1.8 8e+02 1.1 0.1 16 48 423 456 419 459 0.70
Sequence Information
- Coding Sequence
- ATGGAATCCATCACAAATGTGCCACCCACGGAAGACTTTTACGAAATTAAAATTGAAGAATTAGAAGACGTAAAATTCAATTTAGAGGATTTGCACAATTCAATTGACATTAAAGAGGAAGGCGATTTTGAACAATTAACACAGGAAACGTCAAAATATGACAGTTCAATATTTGAGTGTACAATTTGTGGGTTTCAAAGTGGGGATCAAAACTTACTAAAACTGCATTTACAAACTCATACCAGCGCAAAATTGTTTACATGTGATATCTGTGGCTATAGAACCATCCATAGTTCCCATTTAAAAAGGCACGTCAAAATTCACAGCGGTGAAAAACCATTTTCTTGTGAACTTTGTGGTTATCAGTGTTCACAAAATTCACAGTTAAAACGGCATTTGAAGTCGCACACCGGAGAAAAACCGTTGGCTTGTGAAATATGTGAGTATAAGTGTGCCGAAAATTCAGATTTGAAGAGGCATTTTAAAATTCACACTGGGGAAAAACCGTTTACGTGTGACATTTGTGATTATAAATGTACCCAAAAAACTCATTTAAATCTGCACTTAAAGACGCACACCGGCGAGAAATTGTTCACGTGTGAAATCTGCGACTATAAATTTTCACAGAAAGCAAATTTAGAAAGGCACTTAAAAAATCACACTGGCGAGAAGCCTTTTAGTTGTAAGATGTGCGGCTTTAAATGCGCACAAAAATCAGATTTAAAAAGGCATTTTACAACGCACACCGGCGAGAAACCGTTCCAATGTGATATCTGCGATTATAAATGTGGCCACAAAGGAAGTTTGAATATGCACCTAAAAATTCACACTGCTTCGTTGGTTTCATCCGAAAAACCATTTGCTTGTGAAACTTGCGACTATAAAAGTTCGAGGATATCAAATTTAAAAGCGCATTTAAGGACTCACACCGGTGAAAAGCCGTTTGTTTGCGAGATGTGCGGGTATCGGTGCGCACGACGTTCACATTTGCAGAGGCACTTAAGATCCCACAGCAGCGAAAAGCCATTGGCTTGTGAAATGTGCGACTATAAATGTGCAGAAAAGTCGTATTTAAAAAAGCATTTGAAATCTCATACGGGCGAGAAGCCCTACGCTTGTAAAATTTGCGACTTTAAATGTTCACAGAGTGGATATATAAAACAGCACTTAAAAACGCACACCGGCGAAAAAGCATTTGCTTGTGAGATCTGCGACCACAAATGCGCACAGAAATCGCAGTTAAAAGTGCATTTAAAAACTCACACCCGGATTAAAAACTCAAATGAAAAACTGTTGACTTGTGAAATGTGTAAATTTAAGTGTGCACGAAAAGCAAAATTGGATAGGCATTATAACACTTTAAAACATATCAAAAATGAAGAAAAAAGTACATTGTAA
- Protein Sequence
- MESITNVPPTEDFYEIKIEELEDVKFNLEDLHNSIDIKEEGDFEQLTQETSKYDSSIFECTICGFQSGDQNLLKLHLQTHTSAKLFTCDICGYRTIHSSHLKRHVKIHSGEKPFSCELCGYQCSQNSQLKRHLKSHTGEKPLACEICEYKCAENSDLKRHFKIHTGEKPFTCDICDYKCTQKTHLNLHLKTHTGEKLFTCEICDYKFSQKANLERHLKNHTGEKPFSCKMCGFKCAQKSDLKRHFTTHTGEKPFQCDICDYKCGHKGSLNMHLKIHTASLVSSEKPFACETCDYKSSRISNLKAHLRTHTGEKPFVCEMCGYRCARRSHLQRHLRSHSSEKPLACEMCDYKCAEKSYLKKHLKSHTGEKPYACKICDFKCSQSGYIKQHLKTHTGEKAFACEICDHKCAQKSQLKVHLKTHTRIKNSNEKLLTCEMCKFKCARKAKLDRHYNTLKHIKNEEKSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292123;
- 90% Identity
- iTF_01292123;
- 80% Identity
- iTF_01292123;