Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:6150181-6151682[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0018 0.053 14.8 0.3 1 23 58 80 58 80 0.98

2 14 2.6e-05 0.00074 20.7 3.8 1 23 86 108 86 108 0.98

3 14 2.4e-05 0.00069 20.8 3.7 1 23 114 136 114 136 0.98

4 14 0.0032 0.091 14.1 1.0 3 23 144 164 142 164 0.96

5 14 0.00018 0.0052 18.0 6.3 1 23 170 192 170 192 0.99

6 14 3.3e-07 9.5e-06 26.6 1.3 1 23 198 220 198 220 0.98

7 14 0.00063 0.018 16.3 5.2 1 23 226 248 226 248 0.97

8 14 0.0007 0.02 16.1 3.3 1 23 254 276 254 276 0.98

9 14 2.5e-05 0.00072 20.7 0.7 1 23 287 309 287 309 0.97

10 14 6.6e-06 0.00019 22.5 4.7 1 23 315 337 315 337 0.98

11 14 0.00083 0.024 15.9 2.1 3 23 345 365 343 365 0.96

12 14 0.0022 0.064 14.6 3.1 1 23 371 393 371 393 0.98

13 14 7.6e-05 0.0022 19.2 3.6 1 23 399 421 399 421 0.97

14 14 0.16 4.6 8.7 3.6 2 23 433 456 432 456 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0018	0.053	14.8	0.3	1	23	58	80	58	80	0.98
2	14	2.6e-05	0.00074	20.7	3.8	1	23	86	108	86	108	0.98
3	14	2.4e-05	0.00069	20.8	3.7	1	23	114	136	114	136	0.98
4	14	0.0032	0.091	14.1	1.0	3	23	144	164	142	164	0.96
5	14	0.00018	0.0052	18.0	6.3	1	23	170	192	170	192	0.99
6	14	3.3e-07	9.5e-06	26.6	1.3	1	23	198	220	198	220	0.98
7	14	0.00063	0.018	16.3	5.2	1	23	226	248	226	248	0.97
8	14	0.0007	0.02	16.1	3.3	1	23	254	276	254	276	0.98
9	14	2.5e-05	0.00072	20.7	0.7	1	23	287	309	287	309	0.97
10	14	6.6e-06	0.00019	22.5	4.7	1	23	315	337	315	337	0.98
11	14	0.00083	0.024	15.9	2.1	3	23	345	365	343	365	0.96
12	14	0.0022	0.064	14.6	3.1	1	23	371	393	371	393	0.98
13	14	7.6e-05	0.0022	19.2	3.6	1	23	399	421	399	421	0.97
14	14	0.16	4.6	8.7	3.6	2	23	433	456	432	456	0.92

Sequence Information

Coding Sequence: ATGGAATCCATCACAAATGTGCCACCCACGGAAGACTTTTACGAAATTAAAATTGAAGAATTAGAAGACGTAAAATTCAATTTAGAGGATTTGCACAATTCAATTGACATTAAAGAGGAAGGCGATTTTGAACAATTAACACAGGAAACGTCAAAATATGACAGTTCAATATTTGAGTGTACAATTTGTGGGTTTCAAAGTGGGGATCAAAACTTACTAAAACTGCATTTACAAACTCATACCAGCGCAAAATTGTTTACATGTGATATCTGTGGCTATAGAACCATCCATAGTTCCCATTTAAAAAGGCACGTCAAAATTCACAGCGGTGAAAAACCATTTTCTTGTGAACTTTGTGGTTATCAGTGTTCACAAAATTCACAGTTAAAACGGCATTTGAAGTCGCACACCGGAGAAAAACCGTTGGCTTGTGAAATATGTGAGTATAAGTGTGCCGAAAATTCAGATTTGAAGAGGCATTTTAAAATTCACACTGGGGAAAAACCGTTTACGTGTGACATTTGTGATTATAAATGTACCCAAAAAACTCATTTAAATCTGCACTTAAAGACGCACACCGGCGAGAAATTGTTCACGTGTGAAATCTGCGACTATAAATTTTCACAGAAAGCAAATTTAGAAAGGCACTTAAAAAATCACACTGGCGAGAAGCCTTTTAGTTGTAAGATGTGCGGCTTTAAATGCGCACAAAAATCAGATTTAAAAAGGCATTTTACAACGCACACCGGCGAGAAACCGTTCCAATGTGATATCTGCGATTATAAATGTGGCCACAAAGGAAGTTTGAATATGCACCTAAAAATTCACACTGCTTCGTTGGTTTCATCCGAAAAACCATTTGCTTGTGAAACTTGCGACTATAAAAGTTCGAGGATATCAAATTTAAAAGCGCATTTAAGGACTCACACCGGTGAAAAGCCGTTTGTTTGCGAGATGTGCGGGTATCGGTGCGCACGACGTTCACATTTGCAGAGGCACTTAAGATCCCACAGCAGCGAAAAGCCATTGGCTTGTGAAATGTGCGACTATAAATGTGCAGAAAAGTCGTATTTAAAAAAGCATTTGAAATCTCATACGGGCGAGAAGCCCTACGCTTGTAAAATTTGCGACTTTAAATGTTCACAGAGTGGATATATAAAACAGCACTTAAAAACGCACACCGGCGAAAAAGCATTTGCTTGTGAGATCTGCGACCACAAATGCGCACAGAAATCGCAGTTAAAAGTGCATTTAAAAACTCACACCCGGATTAAAAACTCAAATGAAAAACTGTTGACTTGTGAAATGTGTAAATTTAAGTGTGCACGAAAAGCAAAATTGGATAGGCATTATAACACTTTAAAACATATCAAAAATGAAGAAAAAAGTACATTGTAA
Protein Sequence: MESITNVPPTEDFYEIKIEELEDVKFNLEDLHNSIDIKEEGDFEQLTQETSKYDSSIFECTICGFQSGDQNLLKLHLQTHTSAKLFTCDICGYRTIHSSHLKRHVKIHSGEKPFSCELCGYQCSQNSQLKRHLKSHTGEKPLACEICEYKCAENSDLKRHFKIHTGEKPFTCDICDYKCTQKTHLNLHLKTHTGEKLFTCEICDYKFSQKANLERHLKNHTGEKPFSCKMCGFKCAQKSDLKRHFTTHTGEKPFQCDICDYKCGHKGSLNMHLKIHTASLVSSEKPFACETCDYKSSRISNLKAHLRTHTGEKPFVCEMCGYRCARRSHLQRHLRSHSSEKPLACEMCDYKCAEKSYLKKHLKSHTGEKPYACKICDFKCSQSGYIKQHLKTHTGEKAFACEICDHKCAQKSQLKVHLKTHTRIKNSNEKLLTCEMCKFKCARKAKLDRHYNTLKHIKNEEKSTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293223;
90% Identity: iTF_01293223;
80% Identity: iTF_01293223;