Rful006959.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:7125525-7126934[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.2 2.8e+03 -0.6 0.3 21 32 70 81 62 97 0.71 2 13 0.037 17 6.5 0.0 21 46 98 123 84 129 0.90 3 13 3.5 1.6e+03 0.2 0.0 26 46 131 151 125 157 0.80 4 13 1.2 5.6e+02 1.6 0.1 21 44 154 177 146 181 0.79 5 13 0.051 23 6.1 0.0 21 47 182 208 174 214 0.84 6 13 0.7 3.2e+02 2.4 0.1 21 46 210 235 207 241 0.89 7 13 0.16 70 4.5 0.1 25 44 246 265 240 273 0.84 8 13 0.057 26 5.9 0.7 21 46 270 295 265 301 0.76 9 13 0.048 22 6.1 0.1 21 46 298 323 294 329 0.75 10 13 0.38 1.7e+02 3.2 0.0 21 51 326 356 323 357 0.81 11 13 0.09 41 5.3 0.0 21 47 354 380 351 387 0.85 12 13 0.93 4.2e+02 2.0 0.1 21 52 382 413 378 415 0.81 13 13 0.095 43 5.2 0.1 20 51 409 440 402 443 0.77
Sequence Information
- Coding Sequence
- ATGGAAATTCCGTGTAACGCAAGTAGGGGCTATGAAATTAAGATAGAGCTGGAAGACGAAACATTTAATGTGGAAGATTTACATCATTCGATTGACATCAAGGAAGAGAACGGTGCTGAAGAGTTAAATAAACCGTTTGCATGTGAAAAGTGTGACTATAAATCTGAACTGAAAACAAGTTTAAAAAGACATTTGAAAACTCACACCGCTGAAAAAAAATTTACTTGTGAAATTTGTCAATATAAATTTTCAGAAAAATACAGGTTAATTTCGCATTTACGAACGCACACTGGGGAAAAACCATTTGTATGTGAACTTTGTGACGGTAAATTTACAATCGAAACAAATTTGAAAAGACATTTAAAAGTCCACACCGGGGAAAAATTATATCAGTGTGAAATTTGTGATATTAAGGTGACGGAAAAATCAGTTTTAAAAAGACATTTCAAAACTCACACCGGGGAAAAACCGTTTGCTTGTACAATTTGTGACTATAAAGCTGCAGAAAATGCAGATTTGAAAGTGCATTTAAGAACGCACACCGGAGAAAAACCTTTTGCTTGTAAAATTTGTGATTTTAAAAGTGCCTGTAAATCGAATTTAAGAACGCATTTAAAGACACATTCCGGCGAAAAACCGTTTGGCTGTCAAACTTGTGGCTGTCAGTTTGCCCAAAAATCAACTTTGGAAAGGCACGTAAAAGTGCATTTAGAAAATTATACTGATGAAAAATTGTTTTCTTGTGAAATTTGTTCGCATAAATTTCGGAATAAAACAAATCTAAGAATGCATGCAAGAACTCACACCGGGGAAAAACCGTATCATTGTAAAATTTGTGACTTTAGGTGCTCGCGAAACCCGGATCTAAAACGGCATTTGAGAACCCACTCTGGGGAAAAGCCATTTTCTTGTGAAATTTGCGATTATAAATGTGTAGTCCAAAAAAATTTAAAAGATCATCTAACAACTCACACCGGAGAAAAACCATTTTTTTGTCAGATTTGTGACTACAAGTGCGCCACTAAATCAAACTTCAATAAGCACTTAAAAATGCACTCCGGGGAAAAACCGTTTTCTTGTCAAATCTGTAACCTGAAATTTCTACAAAAATCGCAACTAACGAAGCATTTGAGAACTCACACCGGGGAAAAACCGTACGCTTGCGAAAGTTGTGACTATAAATGTGCAGGAATGTCGGATTTAAAGAGACATTTGAAAACCCACACCAGCGAAAAACCGTTTGTTTGTCCACTGTGCGACAAGAAGTTTAAACTAAAAGGTTATGTAACCCAGCACTTAAAAACTCACGCCCATGGCAAACCGTTTTTTTGTGAAATTTGTGACTATAGAAGTGCGAATAAATCGCATTTAAAAATTCACAAAAGGACTCACTCCGGGGAAAAACTATGA
- Protein Sequence
- MEIPCNASRGYEIKIELEDETFNVEDLHHSIDIKEENGAEELNKPFACEKCDYKSELKTSLKRHLKTHTAEKKFTCEICQYKFSEKYRLISHLRTHTGEKPFVCELCDGKFTIETNLKRHLKVHTGEKLYQCEICDIKVTEKSVLKRHFKTHTGEKPFACTICDYKAAENADLKVHLRTHTGEKPFACKICDFKSACKSNLRTHLKTHSGEKPFGCQTCGCQFAQKSTLERHVKVHLENYTDEKLFSCEICSHKFRNKTNLRMHARTHTGEKPYHCKICDFRCSRNPDLKRHLRTHSGEKPFSCEICDYKCVVQKNLKDHLTTHTGEKPFFCQICDYKCATKSNFNKHLKMHSGEKPFSCQICNLKFLQKSQLTKHLRTHTGEKPYACESCDYKCAGMSDLKRHLKTHTSEKPFVCPLCDKKFKLKGYVTQHLKTHAHGKPFFCEICDYRSANKSHLKIHKRTHSGEKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292093;
- 90% Identity
- iTF_01292093;
- 80% Identity
- iTF_01292093;