Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:7125525-7126934[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0018 0.052 14.9 1.8 1 23 46 68 46 68 0.97

2 15 6.2e-05 0.0018 19.5 2.0 1 23 74 96 74 96 0.99

3 15 0.00038 0.011 17.0 0.4 1 23 102 124 102 124 0.98

4 15 0.0004 0.011 16.9 0.8 1 23 130 152 130 152 0.99

5 15 0.00095 0.027 15.7 0.1 1 23 158 180 158 180 0.97

6 15 0.022 0.62 11.5 3.6 1 23 186 208 186 208 0.97

7 15 0.00021 0.0061 17.8 1.8 3 23 216 236 214 236 0.98

8 15 4.8e-05 0.0014 19.8 4.2 1 23 246 268 246 268 0.98

9 15 0.0001 0.0029 18.8 6.1 1 23 274 296 274 296 0.98

10 15 0.00049 0.014 16.6 2.2 1 23 302 324 302 324 0.98

11 15 0.00019 0.0053 18.0 5.2 1 23 330 352 330 352 0.97

12 15 6.4e-05 0.0018 19.4 2.6 1 23 358 380 358 380 0.98

13 15 0.0017 0.049 14.9 1.5 1 23 386 408 386 408 0.98

14 15 3.7e-05 0.0011 20.2 1.1 1 23 414 436 414 436 0.98

15 15 0.00011 0.003 18.7 3.4 1 23 442 464 442 464 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0018	0.052	14.9	1.8	1	23	46	68	46	68	0.97
2	15	6.2e-05	0.0018	19.5	2.0	1	23	74	96	74	96	0.99
3	15	0.00038	0.011	17.0	0.4	1	23	102	124	102	124	0.98
4	15	0.0004	0.011	16.9	0.8	1	23	130	152	130	152	0.99
5	15	0.00095	0.027	15.7	0.1	1	23	158	180	158	180	0.97
6	15	0.022	0.62	11.5	3.6	1	23	186	208	186	208	0.97
7	15	0.00021	0.0061	17.8	1.8	3	23	216	236	214	236	0.98
8	15	4.8e-05	0.0014	19.8	4.2	1	23	246	268	246	268	0.98
9	15	0.0001	0.0029	18.8	6.1	1	23	274	296	274	296	0.98
10	15	0.00049	0.014	16.6	2.2	1	23	302	324	302	324	0.98
11	15	0.00019	0.0053	18.0	5.2	1	23	330	352	330	352	0.97
12	15	6.4e-05	0.0018	19.4	2.6	1	23	358	380	358	380	0.98
13	15	0.0017	0.049	14.9	1.5	1	23	386	408	386	408	0.98
14	15	3.7e-05	0.0011	20.2	1.1	1	23	414	436	414	436	0.98
15	15	0.00011	0.003	18.7	3.4	1	23	442	464	442	464	0.97

Sequence Information

Coding Sequence: ATGGAAATTCCGTGTAACGCAAGTAGGGGCTATGAAATTAAGATAGAGCTGGAAGACGAAACATTTAATGTGGAAGATTTACATCATTCGATTGACATCAAGGAAGAGAACGGTGCTGAAGAGTTAAATAAACCGTTTGCATGTGAAAAGTGTGACTATAAATCTGAACTGAAAACAAGTTTAAAAAGACATTTGAAAACTCACACCGCTGAAAAAAAATTTACTTGTGAAATTTGTCAATATAAATTTTCAGAAAAATACAGGTTAATTTCGCATTTACGAACGCACACTGGGGAAAAACCATTTGTATGTGAACTTTGTGACGGTAAATTTACAATCGAAACAAATTTGAAAAGACATTTAAAAGTCCACACCGGGGAAAAATTATATCAGTGTGAAATTTGTGATATTAAGGTGACGGAAAAATCAGTTTTAAAAAGACATTTCAAAACTCACACCGGGGAAAAACCGTTTGCTTGTACAATTTGTGACTATAAAGCTGCAGAAAATGCAGATTTGAAAGTGCATTTAAGAACGCACACCGGAGAAAAACCTTTTGCTTGTAAAATTTGTGATTTTAAAAGTGCCTGTAAATCGAATTTAAGAACGCATTTAAAGACACATTCCGGCGAAAAACCGTTTGGCTGTCAAACTTGTGGCTGTCAGTTTGCCCAAAAATCAACTTTGGAAAGGCACGTAAAAGTGCATTTAGAAAATTATACTGATGAAAAATTGTTTTCTTGTGAAATTTGTTCGCATAAATTTCGGAATAAAACAAATCTAAGAATGCATGCAAGAACTCACACCGGGGAAAAACCGTATCATTGTAAAATTTGTGACTTTAGGTGCTCGCGAAACCCGGATCTAAAACGGCATTTGAGAACCCACTCTGGGGAAAAGCCATTTTCTTGTGAAATTTGCGATTATAAATGTGTAGTCCAAAAAAATTTAAAAGATCATCTAACAACTCACACCGGAGAAAAACCATTTTTTTGTCAGATTTGTGACTACAAGTGCGCCACTAAATCAAACTTCAATAAGCACTTAAAAATGCACTCCGGGGAAAAACCGTTTTCTTGTCAAATCTGTAACCTGAAATTTCTACAAAAATCGCAACTAACGAAGCATTTGAGAACTCACACCGGGGAAAAACCGTACGCTTGCGAAAGTTGTGACTATAAATGTGCAGGAATGTCGGATTTAAAGAGACATTTGAAAACCCACACCAGCGAAAAACCGTTTGTTTGTCCACTGTGCGACAAGAAGTTTAAACTAAAAGGTTATGTAACCCAGCACTTAAAAACTCACGCCCATGGCAAACCGTTTTTTTGTGAAATTTGTGACTATAGAAGTGCGAATAAATCGCATTTAAAAATTCACAAAAGGACTCACTCCGGGGAAAAACTATGA
Protein Sequence: MEIPCNASRGYEIKIELEDETFNVEDLHHSIDIKEENGAEELNKPFACEKCDYKSELKTSLKRHLKTHTAEKKFTCEICQYKFSEKYRLISHLRTHTGEKPFVCELCDGKFTIETNLKRHLKVHTGEKLYQCEICDIKVTEKSVLKRHFKTHTGEKPFACTICDYKAAENADLKVHLRTHTGEKPFACKICDFKSACKSNLRTHLKTHSGEKPFGCQTCGCQFAQKSTLERHVKVHLENYTDEKLFSCEICSHKFRNKTNLRMHARTHTGEKPYHCKICDFRCSRNPDLKRHLRTHSGEKPFSCEICDYKCVVQKNLKDHLTTHTGEKPFFCQICDYKCATKSNFNKHLKMHSGEKPFSCQICNLKFLQKSQLTKHLRTHTGEKPYACESCDYKCAGMSDLKRHLKTHTSEKPFVCPLCDKKFKLKGYVTQHLKTHAHGKPFFCEICDYRSANKSHLKIHKRTHSGEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293216;
90% Identity: iTF_01293216;
80% Identity: iTF_01293216;