Rful006818.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:20741289-20742209[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.081 36 5.4 0.1 20 45 150 175 143 182 0.84 2 5 1 4.7e+02 1.9 0.2 26 45 184 203 178 206 0.88 3 5 1e-06 0.00046 21.1 0.1 21 52 207 238 203 239 0.88 4 5 1 4.6e+02 1.9 0.2 21 30 235 244 233 257 0.86 5 5 0.0029 1.3 10.1 0.3 16 45 259 287 249 292 0.81
Sequence Information
- Coding Sequence
- ATGGATGCAGTAGCACTCTCAGGGGAGTTTCAAAATATGGAAAACCCCATTCAAGTTTTGCAGTCCCCAAACAATTTAAATATTAAAACAGAAGAGGTGGACATAGAAATCAAGTCCGAAGTTTTGCACTATTCAATTGACATTAAAGAGGAGACTTTTACAAAAGAAGTCAAGTTAGATGAAGAAGAACCTAAACTAAAAAGATGCAAATTTGAATGTGAGATTTGTAATATAAAATTAAATAATAAAGTCCAACTGGAAGAGCACACAAAAGTTCATTTCAGTCCAAAATTATTCGAGTGCATAATTTGTGGGTATAAATCTCCATACAAGCAATCATTGCAACGCCATTCAAAAACACATACGGGTGAGAAATCATTCCAGTGTAAAGTTTGCGATTTTAAGTGTTCCCAAGAATCATATTTGAAACTTCACGTTAGAACTCACAGCTCAGAGAAACCATTCAAGTGTGACCAGTGTTACTATAAGTGTTCTCGAAAGGATTATTTGAAAAATCATTTAAAAACTCATATTGGTAACAAACGAATAGGATGTACAATTTGTGATCGTACATTTAAACGAAAACAAACACTGATTCGGCATCTGAGAACGCACACCGGCGAGAAACCTTATACGTGTGAAATTTGTGTAGCCAACTTTTCGCAATCGTCGCATTTAAAACGTCATTTACGAATGCACACCGGCGAGAAACCTTGGACCTGTGAAATTTGCGGATTTAAATGTTTAGAAAAGGTACGTTTGATGGAGCATAATAGAAGTCACACCGGCGAAAAGCCCTATACATGTGAAATATGCGACTACAAATGTTCACGAAAGCAAAATTTGAACAGTCACTTAAAAACGCACAGTAAAGAAAGGAAATCTGGCTGCAAGAAACTTGATAGTTCTTGTGCAATTTAA
- Protein Sequence
- MDAVALSGEFQNMENPIQVLQSPNNLNIKTEEVDIEIKSEVLHYSIDIKEETFTKEVKLDEEEPKLKRCKFECEICNIKLNNKVQLEEHTKVHFSPKLFECIICGYKSPYKQSLQRHSKTHTGEKSFQCKVCDFKCSQESYLKLHVRTHSSEKPFKCDQCYYKCSRKDYLKNHLKTHIGNKRIGCTICDRTFKRKQTLIRHLRTHTGEKPYTCEICVANFSQSSHLKRHLRMHTGEKPWTCEICGFKCLEKVRLMEHNRSHTGEKPYTCEICDYKCSRKQNLNSHLKTHSKERKSGCKKLDSSCAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294624;
- 90% Identity
- iTF_01292688;
- 80% Identity
- iTF_01292688;