Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996559.1:25524985-25533951[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.88 4e+02 2.1 0.3 16 33 85 104 78 118 0.66

2 14 0.00028 0.12 13.3 0.2 21 52 119 150 115 152 0.93

3 14 0.34 1.5e+02 3.4 0.0 21 52 175 206 170 208 0.91

4 14 1.3 6.1e+02 1.5 0.1 23 48 205 230 199 234 0.82

5 14 0.67 3e+02 2.5 0.0 21 33 231 243 223 258 0.75

6 14 0.38 1.7e+02 3.2 0.0 21 46 259 284 255 288 0.82

7 14 0.0035 1.6 9.8 1.6 22 45 343 366 334 373 0.81

8 14 0.033 15 6.7 0.0 21 47 370 396 366 403 0.85

9 14 0.039 18 6.4 0.3 21 48 454 481 438 487 0.78

10 14 8.1 3.7e+03 -1.0 0.0 21 31 482 492 479 508 0.75

11 14 0.58 2.6e+02 2.7 0.1 20 45 509 534 497 541 0.70

12 14 1.5 6.7e+02 1.4 0.0 21 45 538 562 534 565 0.86

13 14 0.066 30 5.7 0.2 18 47 563 592 553 597 0.79

14 14 0.39 1.7e+02 3.2 0.1 21 43 594 616 590 626 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.88	4e+02	2.1	0.3	16	33	85	104	78	118	0.66
2	14	0.00028	0.12	13.3	0.2	21	52	119	150	115	152	0.93
3	14	0.34	1.5e+02	3.4	0.0	21	52	175	206	170	208	0.91
4	14	1.3	6.1e+02	1.5	0.1	23	48	205	230	199	234	0.82
5	14	0.67	3e+02	2.5	0.0	21	33	231	243	223	258	0.75
6	14	0.38	1.7e+02	3.2	0.0	21	46	259	284	255	288	0.82
7	14	0.0035	1.6	9.8	1.6	22	45	343	366	334	373	0.81
8	14	0.033	15	6.7	0.0	21	47	370	396	366	403	0.85
9	14	0.039	18	6.4	0.3	21	48	454	481	438	487	0.78
10	14	8.1	3.7e+03	-1.0	0.0	21	31	482	492	479	508	0.75
11	14	0.58	2.6e+02	2.7	0.1	20	45	509	534	497	541	0.70
12	14	1.5	6.7e+02	1.4	0.0	21	45	538	562	534	565	0.86
13	14	0.066	30	5.7	0.2	18	47	563	592	553	597	0.79
14	14	0.39	1.7e+02	3.2	0.1	21	43	594	616	590	626	0.80

Sequence Information

Coding Sequence: ATGGAACCTCTGCCTAGCTGCTCCGTGATTAAAACTGAAGATATGGAATTCAAATTGGAAGATGACATCAAGGAAGAAAACCAATTCTTACAAGAAACTCCAAGCCATTCCCCAATTAAGACTGAAGATATGGAATTTAAGTTTGAAGACTTGCATCATTCCATTGACATTAAAGAGGAGTCTTTAATTCTGGAACTTCAGCTTGACAGCGAACCCAAACTGGAACCTTTTAAGTACGAAAATTCTGACCAAAAATCCGCAAGTAAAAATGAAAATTTACCGTTTACGTGTCAAATTTGTGACTACAAATGTGCACGGAAGTTAACGTTAGAAATTCATTTAAGAACCCATACCGGCGAGAAGCCGTATACATGTGACATTTGCAATTTTAAATTTGCATGCGCAGGATATTTAAGAAGACACTTAAAAAAACACACTTTTGAGAAACCGTTTTCGTGTGAATTTTGCGATTATAAATGCGTACGGAAACAGCAGTTAATAGTACACTTAAGAACTCATACCGGTGAGAAACCGTTTGCGTGTGAATTGTGTGATTCTAAATTTGCACAGAAAGTACATTTGAATATACATTTGAGAACTCACACCGGAGCAAAACCTTTCATGTGCGAATTTTGTGGCTACAAATGTACAGAAAACAGGAAGCTAAAAAAGCATTTAAGAGTTCATACTGGTGAGAAACCGTTCACGTGTGATATTTGTAAACGTAAATTTGCATGGAAAGATGGTTTAAAACTTCACTTGAAGACACATACCGGCGAAACGCCCTTTACGTGTGAAATTTGTAATAGTAAATTTACTGTAAAGGGACGGTTAACACAACATTTAAAAATTCATAGTGATAAATCGTTTTCTTGTGACAGATGTGATTACAAAAGCGCAATTGAAGGTGATTTAAAGCGACATTTAATAACGCATACCAACGAGAAAGTGCACATGTGTGAAATTTGCGGCCGGAAATATGCAAGAGCAGCAGATTTACAAAGTCACGTAAGAACACATTCGCGCGAACATTCGTTTACTTGTGAAATTTGTAACTATGTATGTTCACGTGCGAGAGATCTACGAAACCACATCAGAAAGCATACGGGCGAGAAACCGTTTACATGCGAAATTTGTGGAAATATATTCGCACATGTAGGAAGTTTGAAAACGCATTTGAAAACTCATACCGGAGAGAAACCATTCAAATGTGACTTTTGCGACTACAAAAGTATACTAAAAGGAAATTTGGTAGCTCATTTAAGAAGTCATACTGGTGAGAAACCGTTTATGTGTGAATTTTGTAACTATAAATGTGCACGAAATGGAAGTTTGGTTGTTCATTTGAGAAGTCACACTGGTGAAAAACCGTTTGAATGTACACTTTGCGATTACAAATGTTCACGTCAACACAATTTTAAACGACATTTAAAAACTCATACTGGCGAAAAACCGTTCGCTTGTGAAATTTGTGGTTTCAAATTTATATGCGCCGGAGGTTTGAAAAAGCATTTTAGAACACACACAGGCGAGAAACCTTTTACGTGTAAATTTTGTGATTACAAATGCATACAAAAGGGGAGTTTGGCAGCTCATTTACGGACCCATACTGGTGAAAAACCTTTCAGTTGTTCTATGTGTGACTTTAAATATGCGCATAAGGATAGTTTAAAGCGACATTTAAGTACTCACACAGGGGAAAAACCGTTTCAATGTACAATGTGTGAGTATAAATGTGCACGTAAACACAATTTTAAACGGCATTTAAAAACTCATACCGGGGAAAAGCCATTTACGTGTGAAATTTGTGGATATAAATTTGTATGTTCGGGAAGTTTGAAGAAACATTCAAGAACGCACACCGGAAACGAGAAGCCGTTTAAGAGTGTAAAAGAAAACTTACTAGTTCAGGCTGATGTGAAATTGTTTACTTGTGCAATTTGTGACTATAAATGTGCACACAAAAAATTATTAAAACTTCATTTAGCAACTCATACTGAAACAAAATAA
Protein Sequence: MEPLPSCSVIKTEDMEFKLEDDIKEENQFLQETPSHSPIKTEDMEFKFEDLHHSIDIKEESLILELQLDSEPKLEPFKYENSDQKSASKNENLPFTCQICDYKCARKLTLEIHLRTHTGEKPYTCDICNFKFACAGYLRRHLKKHTFEKPFSCEFCDYKCVRKQQLIVHLRTHTGEKPFACELCDSKFAQKVHLNIHLRTHTGAKPFMCEFCGYKCTENRKLKKHLRVHTGEKPFTCDICKRKFAWKDGLKLHLKTHTGETPFTCEICNSKFTVKGRLTQHLKIHSDKSFSCDRCDYKSAIEGDLKRHLITHTNEKVHMCEICGRKYARAADLQSHVRTHSREHSFTCEICNYVCSRARDLRNHIRKHTGEKPFTCEICGNIFAHVGSLKTHLKTHTGEKPFKCDFCDYKSILKGNLVAHLRSHTGEKPFMCEFCNYKCARNGSLVVHLRSHTGEKPFECTLCDYKCSRQHNFKRHLKTHTGEKPFACEICGFKFICAGGLKKHFRTHTGEKPFTCKFCDYKCIQKGSLAAHLRTHTGEKPFSCSMCDFKYAHKDSLKRHLSTHTGEKPFQCTMCEYKCARKHNFKRHLKTHTGEKPFTCEICGYKFVCSGSLKKHSRTHTGNEKPFKSVKENLLVQADVKLFTCAICDYKCAHKKLLKLHLATHTETK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292038;
90% Identity: iTF_01292038;
80% Identity: iTF_01292038;