Rful017376.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996559.1:25524985-25533951[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00033 0.0094 17.2 2.5 1 23 95 117 95 117 0.99
2 20 0.0071 0.2 13.0 3.2 1 23 123 145 123 145 0.99
3 20 0.00032 0.0092 17.2 3.2 1 23 151 173 151 173 0.98
4 20 8.7e-05 0.0025 19.0 1.1 1 23 179 201 179 201 0.97
5 20 0.002 0.057 14.7 4.5 1 23 207 229 207 229 0.98
6 20 0.00086 0.025 15.9 0.9 1 23 235 257 235 257 0.99
7 20 0.001 0.03 15.6 1.0 1 23 263 285 263 285 0.98
8 20 0.021 0.61 11.5 0.2 1 23 290 312 290 312 0.98
9 20 6.8e-06 0.0002 22.5 0.4 1 23 318 340 318 340 0.97
10 20 9.8e-06 0.00028 22.0 2.4 1 23 346 368 346 368 0.99
11 20 9.3e-05 0.0027 18.9 0.7 1 23 374 396 374 396 0.99
12 20 0.0016 0.046 15.0 0.5 1 23 402 424 402 424 0.99
13 20 0.0013 0.036 15.3 1.8 1 23 430 452 430 452 0.98
14 20 0.00045 0.013 16.8 8.5 1 23 458 480 458 480 0.98
15 20 0.0088 0.25 12.7 1.4 1 23 486 508 486 508 0.97
16 20 0.00015 0.0044 18.2 2.7 1 23 514 536 514 536 0.99
17 20 0.00021 0.0061 17.8 3.9 1 23 542 564 542 564 0.98
18 20 0.0018 0.051 14.9 8.7 1 23 570 592 570 592 0.99
19 20 0.0011 0.031 15.6 3.2 1 23 598 620 598 620 0.99
20 20 0.0033 0.095 14.0 3.6 1 23 643 665 643 665 0.98

Sequence Information

Coding Sequence
ATGGAACCTCTGCCTAGCTGCTCCGTGATTAAAACTGAAGATATGGAATTCAAATTGGAAGATGACATCAAGGAAGAAAACCAATTCTTACAAGAAACTCCAAGCCATTCCCCAATTAAGACTGAAGATATGGAATTTAAGTTTGAAGACTTGCATCATTCCATTGACATTAAAGAGGAGTCTTTAATTCTGGAACTTCAGCTTGACAGCGAACCCAAACTGGAACCTTTTAAGTACGAAAATTCTGACCAAAAATCCGCAAGTAAAAATGAAAATTTACCGTTTACGTGTCAAATTTGTGACTACAAATGTGCACGGAAGTTAACGTTAGAAATTCATTTAAGAACCCATACCGGCGAGAAGCCGTATACATGTGACATTTGCAATTTTAAATTTGCATGCGCAGGATATTTAAGAAGACACTTAAAAAAACACACTTTTGAGAAACCGTTTTCGTGTGAATTTTGCGATTATAAATGCGTACGGAAACAGCAGTTAATAGTACACTTAAGAACTCATACCGGTGAGAAACCGTTTGCGTGTGAATTGTGTGATTCTAAATTTGCACAGAAAGTACATTTGAATATACATTTGAGAACTCACACCGGAGCAAAACCTTTCATGTGCGAATTTTGTGGCTACAAATGTACAGAAAACAGGAAGCTAAAAAAGCATTTAAGAGTTCATACTGGTGAGAAACCGTTCACGTGTGATATTTGTAAACGTAAATTTGCATGGAAAGATGGTTTAAAACTTCACTTGAAGACACATACCGGCGAAACGCCCTTTACGTGTGAAATTTGTAATAGTAAATTTACTGTAAAGGGACGGTTAACACAACATTTAAAAATTCATAGTGATAAATCGTTTTCTTGTGACAGATGTGATTACAAAAGCGCAATTGAAGGTGATTTAAAGCGACATTTAATAACGCATACCAACGAGAAAGTGCACATGTGTGAAATTTGCGGCCGGAAATATGCAAGAGCAGCAGATTTACAAAGTCACGTAAGAACACATTCGCGCGAACATTCGTTTACTTGTGAAATTTGTAACTATGTATGTTCACGTGCGAGAGATCTACGAAACCACATCAGAAAGCATACGGGCGAGAAACCGTTTACATGCGAAATTTGTGGAAATATATTCGCACATGTAGGAAGTTTGAAAACGCATTTGAAAACTCATACCGGAGAGAAACCATTCAAATGTGACTTTTGCGACTACAAAAGTATACTAAAAGGAAATTTGGTAGCTCATTTAAGAAGTCATACTGGTGAGAAACCGTTTATGTGTGAATTTTGTAACTATAAATGTGCACGAAATGGAAGTTTGGTTGTTCATTTGAGAAGTCACACTGGTGAAAAACCGTTTGAATGTACACTTTGCGATTACAAATGTTCACGTCAACACAATTTTAAACGACATTTAAAAACTCATACTGGCGAAAAACCGTTCGCTTGTGAAATTTGTGGTTTCAAATTTATATGCGCCGGAGGTTTGAAAAAGCATTTTAGAACACACACAGGCGAGAAACCTTTTACGTGTAAATTTTGTGATTACAAATGCATACAAAAGGGGAGTTTGGCAGCTCATTTACGGACCCATACTGGTGAAAAACCTTTCAGTTGTTCTATGTGTGACTTTAAATATGCGCATAAGGATAGTTTAAAGCGACATTTAAGTACTCACACAGGGGAAAAACCGTTTCAATGTACAATGTGTGAGTATAAATGTGCACGTAAACACAATTTTAAACGGCATTTAAAAACTCATACCGGGGAAAAGCCATTTACGTGTGAAATTTGTGGATATAAATTTGTATGTTCGGGAAGTTTGAAGAAACATTCAAGAACGCACACCGGAAACGAGAAGCCGTTTAAGAGTGTAAAAGAAAACTTACTAGTTCAGGCTGATGTGAAATTGTTTACTTGTGCAATTTGTGACTATAAATGTGCACACAAAAAATTATTAAAACTTCATTTAGCAACTCATACTGAAACAAAATAA
Protein Sequence
MEPLPSCSVIKTEDMEFKLEDDIKEENQFLQETPSHSPIKTEDMEFKFEDLHHSIDIKEESLILELQLDSEPKLEPFKYENSDQKSASKNENLPFTCQICDYKCARKLTLEIHLRTHTGEKPYTCDICNFKFACAGYLRRHLKKHTFEKPFSCEFCDYKCVRKQQLIVHLRTHTGEKPFACELCDSKFAQKVHLNIHLRTHTGAKPFMCEFCGYKCTENRKLKKHLRVHTGEKPFTCDICKRKFAWKDGLKLHLKTHTGETPFTCEICNSKFTVKGRLTQHLKIHSDKSFSCDRCDYKSAIEGDLKRHLITHTNEKVHMCEICGRKYARAADLQSHVRTHSREHSFTCEICNYVCSRARDLRNHIRKHTGEKPFTCEICGNIFAHVGSLKTHLKTHTGEKPFKCDFCDYKSILKGNLVAHLRSHTGEKPFMCEFCNYKCARNGSLVVHLRSHTGEKPFECTLCDYKCSRQHNFKRHLKTHTGEKPFACEICGFKFICAGGLKKHFRTHTGEKPFTCKFCDYKCIQKGSLAAHLRTHTGEKPFSCSMCDFKYAHKDSLKRHLSTHTGEKPFQCTMCEYKCARKHNFKRHLKTHTGEKPFTCEICGYKFVCSGSLKKHSRTHTGNEKPFKSVKENLLVQADVKLFTCAICDYKCAHKKLLKLHLATHTETK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01293206;
90% Identity
iTF_01293206;
80% Identity
iTF_01293206;