Rful004794.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:22333397-22334968[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.5 2.9e+03 -0.7 0.0 20 47 126 153 115 158 0.66 2 12 0.28 1.3e+02 3.7 0.1 21 46 155 180 148 188 0.86 3 12 3.8 1.7e+03 0.1 0.0 26 44 185 204 182 209 0.87 4 12 0.0073 3.3 8.8 0.0 21 48 209 236 199 240 0.76 5 12 0.16 72 4.5 0.0 20 46 236 262 233 269 0.78 6 12 0.43 1.9e+02 3.1 0.1 21 46 271 296 263 302 0.77 7 12 0.019 8.8 7.4 0.1 20 52 298 330 288 332 0.85 8 12 0.68 3.1e+02 2.5 0.1 21 45 327 351 323 358 0.74 9 12 4.8 2.2e+03 -0.3 0.1 21 44 355 378 351 391 0.81 10 12 6.4 2.9e+03 -0.7 0.0 22 44 384 406 375 411 0.76 11 12 0.00029 0.13 13.2 0.0 21 50 411 440 403 444 0.90 12 12 0.99 4.5e+02 1.9 0.1 26 46 472 492 460 500 0.83
Sequence Information
- Coding Sequence
- ATGGCACAACTTTCTTTGGAAGAGTCTCTCCACTTAAATGAAAGTACTAACAATATTTTGTCAACCCCGTGCAATTTGATGAGTAACTCAGAAATTAAAAAAGAACCACAAGATGTACAATTCCAATTGGAAGACTTGCATCATACATTTGACATCAAAGAAGAGACCCATTTTTTAAAATCAGAACTAAACGACGAATTTGAATTACAACAATTTGACCTTATTAAGGTAGAAAACGTGTGTAGCTTTGAAGATTCTCAAAAAAGTACTTATTCGGTTAAAACTCACATCGATGATGGTTTATTCGCTTGTGACGTTTGTGACTTCAAATCATCAAGAAAAGGCACTTTGAAATGGCACGTAAAAGCTCATTCTAAGGTTAAGAAATCATTTGCTTGTCAGAATTGTGATTATAAATCATTTCGTAAAGATAACTTAAAACGACATAATAAAATCCATACGGGGGAAAAACCGTTTATATGTGCAATTTGTGAGCATAAATTTGTAGACAAAATCAATTTGAAACAGCATATCAAAACACATAAATTATTCGCATGTGGACTTTGCGACTATAAAGTAATAGGTAAAGCCAACAAATTTGAACGACATATGAGAACCCACACCGGGGAAAAACCGTTCAATTGTGATATTTGTGACTATAAATCAATAGACGAAGTCAATTTGCGGCGGCATATGAAAACTCATACTAGCGAAAAACCGTTCGGATGTGAAATGTGTAACTATAAATCATTGCGGAAACCTAATTTAGTAAGACATATGAGAACTCATACCGGGGAAAAACCGTTCAATTGTGAAAAACCGTTTGAATGTGATTTGTGTAACTATAAGTCATTACGAAAACCTAATTTAGAAAGACATATGAGAACTCATACCGGGGAAAAACCGTTCAATTGTGACATGTGTGACTACAAAGCTTTAGACACAACGAATTTGAAACGGCATATTATAAGAAATCATAACCCAAAACCATTCATGTGCGAAATTTGTGACTACAAAGCGATAGATATATCTAATTTGGAACGGCACGTAGGAACCCATACAGGTGAAAAACCATACGAATGTGTGATATGTGACTATAAATGTTCAAGCAAGAAATCGTTAAAATACCATATGAAAAACCATACCGGTGAAATACCGCATCAGTGTAAAGAGTGTAACTATAAATCATTAAAAAAATCGAATTTGGAACGGCATGTACGTACCCATACAGGTGAAAAACCCTTCACTTGTGAAATTTGTGACCACAAATTTTTAGACAAAACCAATCTGGATCGGCATTTGAAAACCCAACATATGAGCCAAAAATTTACTTGTGAAATTTGCGATTATAAATCAACAAGTAAAGCCAAATTTGAACGGCATACGAGAACTCACGCCGGGAAAAAGTCATATTTTTGTGGAATTTGTGACTACAAATCAAGAGGCAGGACCAACTTAGAACGACACGTAAGAACTCATACAGGCGAAAAACCGTTCGGGTGTAAACTCTGTGACTATAAATCGCTACACAAAATACATTTGGAACTGCATATGAGGACCCATACAGGCTAA
- Protein Sequence
- MAQLSLEESLHLNESTNNILSTPCNLMSNSEIKKEPQDVQFQLEDLHHTFDIKEETHFLKSELNDEFELQQFDLIKVENVCSFEDSQKSTYSVKTHIDDGLFACDVCDFKSSRKGTLKWHVKAHSKVKKSFACQNCDYKSFRKDNLKRHNKIHTGEKPFICAICEHKFVDKINLKQHIKTHKLFACGLCDYKVIGKANKFERHMRTHTGEKPFNCDICDYKSIDEVNLRRHMKTHTSEKPFGCEMCNYKSLRKPNLVRHMRTHTGEKPFNCEKPFECDLCNYKSLRKPNLERHMRTHTGEKPFNCDMCDYKALDTTNLKRHIIRNHNPKPFMCEICDYKAIDISNLERHVGTHTGEKPYECVICDYKCSSKKSLKYHMKNHTGEIPHQCKECNYKSLKKSNLERHVRTHTGEKPFTCEICDHKFLDKTNLDRHLKTQHMSQKFTCEICDYKSTSKAKFERHTRTHAGKKSYFCGICDYKSRGRTNLERHVRTHTGEKPFGCKLCDYKSLHKIHLELHMRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292216;
- 90% Identity
- iTF_01292216;
- 80% Identity
- iTF_01292216;