Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:22333397-22334968[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0019 0.053 14.8 0.3 1 23 102 124 102 124 0.96

2 15 0.002 0.059 14.7 2.5 1 23 131 153 131 153 0.94

3 15 4.1e-05 0.0012 20.0 1.2 1 23 159 181 159 181 0.98

4 15 0.28 8.1 8.0 0.3 1 23 184 207 184 207 0.88

5 15 2.5e-05 0.00071 20.7 0.5 1 23 213 235 213 235 0.98

6 15 0.0075 0.22 12.9 0.9 3 23 243 263 241 263 0.96

7 15 0.00052 0.015 16.6 1.1 1 23 275 297 275 297 0.97

8 15 0.15 4.3 8.8 0.6 1 23 303 326 303 326 0.94

9 15 0.0025 0.073 14.4 0.0 1 23 331 353 331 353 0.97

10 15 0.00039 0.011 16.9 4.3 1 23 359 381 359 381 0.98

11 15 0.0041 0.12 13.7 4.3 1 23 387 409 387 409 0.97

12 15 0.0012 0.036 15.4 2.9 1 23 415 438 415 438 0.98

13 15 0.00013 0.0036 18.5 2.3 1 23 443 465 443 465 0.99

14 15 0.00022 0.0065 17.7 0.9 1 23 471 493 471 493 0.98

15 15 0.36 10 7.6 4.1 3 23 501 521 499 521 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0019	0.053	14.8	0.3	1	23	102	124	102	124	0.96
2	15	0.002	0.059	14.7	2.5	1	23	131	153	131	153	0.94
3	15	4.1e-05	0.0012	20.0	1.2	1	23	159	181	159	181	0.98
4	15	0.28	8.1	8.0	0.3	1	23	184	207	184	207	0.88
5	15	2.5e-05	0.00071	20.7	0.5	1	23	213	235	213	235	0.98
6	15	0.0075	0.22	12.9	0.9	3	23	243	263	241	263	0.96
7	15	0.00052	0.015	16.6	1.1	1	23	275	297	275	297	0.97
8	15	0.15	4.3	8.8	0.6	1	23	303	326	303	326	0.94
9	15	0.0025	0.073	14.4	0.0	1	23	331	353	331	353	0.97
10	15	0.00039	0.011	16.9	4.3	1	23	359	381	359	381	0.98
11	15	0.0041	0.12	13.7	4.3	1	23	387	409	387	409	0.97
12	15	0.0012	0.036	15.4	2.9	1	23	415	438	415	438	0.98
13	15	0.00013	0.0036	18.5	2.3	1	23	443	465	443	465	0.99
14	15	0.00022	0.0065	17.7	0.9	1	23	471	493	471	493	0.98
15	15	0.36	10	7.6	4.1	3	23	501	521	499	521	0.96

Sequence Information

Coding Sequence: ATGGCACAACTTTCTTTGGAAGAGTCTCTCCACTTAAATGAAAGTACTAACAATATTTTGTCAACCCCGTGCAATTTGATGAGTAACTCAGAAATTAAAAAAGAACCACAAGATGTACAATTCCAATTGGAAGACTTGCATCATACATTTGACATCAAAGAAGAGACCCATTTTTTAAAATCAGAACTAAACGACGAATTTGAATTACAACAATTTGACCTTATTAAGGTAGAAAACGTGTGTAGCTTTGAAGATTCTCAAAAAAGTACTTATTCGGTTAAAACTCACATCGATGATGGTTTATTCGCTTGTGACGTTTGTGACTTCAAATCATCAAGAAAAGGCACTTTGAAATGGCACGTAAAAGCTCATTCTAAGGTTAAGAAATCATTTGCTTGTCAGAATTGTGATTATAAATCATTTCGTAAAGATAACTTAAAACGACATAATAAAATCCATACGGGGGAAAAACCGTTTATATGTGCAATTTGTGAGCATAAATTTGTAGACAAAATCAATTTGAAACAGCATATCAAAACACATAAATTATTCGCATGTGGACTTTGCGACTATAAAGTAATAGGTAAAGCCAACAAATTTGAACGACATATGAGAACCCACACCGGGGAAAAACCGTTCAATTGTGATATTTGTGACTATAAATCAATAGACGAAGTCAATTTGCGGCGGCATATGAAAACTCATACTAGCGAAAAACCGTTCGGATGTGAAATGTGTAACTATAAATCATTGCGGAAACCTAATTTAGTAAGACATATGAGAACTCATACCGGGGAAAAACCGTTCAATTGTGAAAAACCGTTTGAATGTGATTTGTGTAACTATAAGTCATTACGAAAACCTAATTTAGAAAGACATATGAGAACTCATACCGGGGAAAAACCGTTCAATTGTGACATGTGTGACTACAAAGCTTTAGACACAACGAATTTGAAACGGCATATTATAAGAAATCATAACCCAAAACCATTCATGTGCGAAATTTGTGACTACAAAGCGATAGATATATCTAATTTGGAACGGCACGTAGGAACCCATACAGGTGAAAAACCATACGAATGTGTGATATGTGACTATAAATGTTCAAGCAAGAAATCGTTAAAATACCATATGAAAAACCATACCGGTGAAATACCGCATCAGTGTAAAGAGTGTAACTATAAATCATTAAAAAAATCGAATTTGGAACGGCATGTACGTACCCATACAGGTGAAAAACCCTTCACTTGTGAAATTTGTGACCACAAATTTTTAGACAAAACCAATCTGGATCGGCATTTGAAAACCCAACATATGAGCCAAAAATTTACTTGTGAAATTTGCGATTATAAATCAACAAGTAAAGCCAAATTTGAACGGCATACGAGAACTCACGCCGGGAAAAAGTCATATTTTTGTGGAATTTGTGACTACAAATCAAGAGGCAGGACCAACTTAGAACGACACGTAAGAACTCATACAGGCGAAAAACCGTTCGGGTGTAAACTCTGTGACTATAAATCGCTACACAAAATACATTTGGAACTGCATATGAGGACCCATACAGGCTAA
Protein Sequence: MAQLSLEESLHLNESTNNILSTPCNLMSNSEIKKEPQDVQFQLEDLHHTFDIKEETHFLKSELNDEFELQQFDLIKVENVCSFEDSQKSTYSVKTHIDDGLFACDVCDFKSSRKGTLKWHVKAHSKVKKSFACQNCDYKSFRKDNLKRHNKIHTGEKPFICAICEHKFVDKINLKQHIKTHKLFACGLCDYKVIGKANKFERHMRTHTGEKPFNCDICDYKSIDEVNLRRHMKTHTSEKPFGCEMCNYKSLRKPNLVRHMRTHTGEKPFNCEKPFECDLCNYKSLRKPNLERHMRTHTGEKPFNCDMCDYKALDTTNLKRHIIRNHNPKPFMCEICDYKAIDISNLERHVGTHTGEKPYECVICDYKCSSKKSLKYHMKNHTGEIPHQCKECNYKSLKKSNLERHVRTHTGEKPFTCEICDHKFLDKTNLDRHLKTQHMSQKFTCEICDYKSTSKAKFERHTRTHAGKKSYFCGICDYKSRGRTNLERHVRTHTGEKPFGCKLCDYKSLHKIHLELHMRTHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293204;
90% Identity: iTF_01293204;
80% Identity: iTF_01293204;