Rful008602.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:6247190-6248776[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 85 4.2 0.1 23 45 81 103 78 110 0.88 2 13 4.3 1.9e+03 -0.1 0.1 26 48 112 134 103 138 0.75 3 13 0.018 8 7.5 0.2 21 45 135 159 131 162 0.89 4 13 0.012 5.3 8.1 0.1 17 52 159 194 158 196 0.88 5 13 2.7 1.2e+03 0.5 0.1 23 44 193 214 189 223 0.69 6 13 0.65 2.9e+02 2.5 0.2 21 43 219 241 215 246 0.84 7 13 0.00067 0.3 12.1 0.7 14 52 240 278 234 280 0.81 8 13 0.16 74 4.4 0.0 21 45 303 327 298 337 0.87 9 13 8.2 3.7e+03 -1.0 0.1 22 45 333 356 329 363 0.70 10 13 0.036 16 6.5 0.2 21 52 360 391 356 393 0.91 11 13 0.67 3e+02 2.5 0.0 21 46 416 441 413 448 0.84 12 13 0.95 4.3e+02 2.0 0.0 21 52 472 503 466 505 0.71 13 13 0.12 56 4.8 0.0 21 45 500 524 496 527 0.90
Sequence Information
- Coding Sequence
- ATGGCTCAAGTGCACCCAACAGAAGAATTGAAAATTATGGACGCTAAGGGTAAAGTTTTGGAAACCCTAAATAATTTAAAAGGCGATTGTGAAATTAAAAGTGAAGAGTTGGACGACATGAAATTCAATTTGGAAGATTTGCATCACTCGATTGATATTAAAGAGGAGAGTAATTCTGATGTTTTAATCCGAGAGGATCCCAAGAAAATAAAAAGGAATTTGAAAACCCACATCGGCTTGAATCCATTTACGTGTGGAATTTGCAACTACGAAAGTGCACAAAAATCACATTTAAGGATTCATTTGAGAACCCACTCAGGTGAGAAATTATTTCCTTGTAATATCTGTAAATACAAATGTGGAAGTAAATCAGACTTGCGAAAGCATTTCAAAATTCACACTGGAGAAAAACCATTTGCGTGTGAATTTTGTGACTATAAATGCGCGCAGAAATCAAATTTACAGAGGCATTTAAGTAGACACACGGGTGAAAAACCGTTTGCTTGTGAACTTTGTGACTATAAATGTAGACAAAAGGAAAGTTTAAATGTTCATTTAAAAACACACACTGGCGTGAAACCATTCACCTGTGACATTTGCGACTATAAATGTGCAGCTAAGTCTTATTTAAAAGTACACTTAATGACTCACACTGGGGAAAAACCGTTTGCATGTGATATTTGTGATTATAAATGTACGCGTAGTGGAAGTTTAAAAAAACACAGAAGAACACACACCGGCGAGAAACCATACGCTTGTGACATTTGTGACTATAAATGTGCCCGTAACTCGCGATTAAAGCGCCATTTAAAAACTCACGCTGCGGATAAACCTTTTTTTTGCGAAATGTGTGACTTCAAATGTACACAAAAATCAACTTTACAAGAACACGTAAATATTCACACTGGCGAGAAACCTTTCGGTTGTGGAATTTGTGATCATAAATTTGCTCGTAAAGCAAACTTAAAAATGCACTTGAAAGCCCACATCGGAGCCGACAAACCGTTTGTTTGTGAAATTTGTGACTATAAATGTGGAGTTAAATCGCATTTAAAAGAACACTTAAAAACTCACACCGGTGAGAAGCCATTTAGATGTGAAATTTGTAACCATAAAACTGCACAAAAAGGACAATTAGAAAAGCACTTAAAAATTCACACCTGCGAAAAACCGCATGCTTGTAAATTCTGTGACTATAAATGCGCCGATAAATCGGATTTAAAACAACACTTTAAAATTCATACCGGAGAAAAACCGTTTGCATGCGACTTTTGTGACTATAAAAGTGTCCGTAAGGCGACTTTGAGAATGCATTTAAAAATTCACACCGGTGATAAGTCGTTTGTCTGTGAATTTTGCGACTATAAATGTGTTCGAAAACATACTTTACAAATGCATTTAAAAACGCACTCCGGTGAAAAGCCATTCGCTTGTGAAATATGCGAATATAAAAGTGTATACAAAGCAGGATTAAAAATGCATTTAAAAATCCACACCGGAGAAAAACCGTTTGTTTGTGGTATTTGTGATTATAAGTTTACTCAAAAGTCACATTTACAAAAACATTTAAAAACTCATTCGGCTTAG
- Protein Sequence
- MAQVHPTEELKIMDAKGKVLETLNNLKGDCEIKSEELDDMKFNLEDLHHSIDIKEESNSDVLIREDPKKIKRNLKTHIGLNPFTCGICNYESAQKSHLRIHLRTHSGEKLFPCNICKYKCGSKSDLRKHFKIHTGEKPFACEFCDYKCAQKSNLQRHLSRHTGEKPFACELCDYKCRQKESLNVHLKTHTGVKPFTCDICDYKCAAKSYLKVHLMTHTGEKPFACDICDYKCTRSGSLKKHRRTHTGEKPYACDICDYKCARNSRLKRHLKTHAADKPFFCEMCDFKCTQKSTLQEHVNIHTGEKPFGCGICDHKFARKANLKMHLKAHIGADKPFVCEICDYKCGVKSHLKEHLKTHTGEKPFRCEICNHKTAQKGQLEKHLKIHTCEKPHACKFCDYKCADKSDLKQHFKIHTGEKPFACDFCDYKSVRKATLRMHLKIHTGDKSFVCEFCDYKCVRKHTLQMHLKTHSGEKPFACEICEYKSVYKAGLKMHLKIHTGEKPFVCGICDYKFTQKSHLQKHLKTHSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292072;
- 90% Identity
- iTF_01292072;
- 80% Identity
- iTF_01292072;