Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:6247190-6248776[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.9e-05 0.00085 20.5 1.6 1 23 83 105 83 105 0.99

2 16 0.0012 0.034 15.4 3.8 1 23 111 133 111 133 0.97

3 16 0.00011 0.0032 18.7 3.3 1 23 139 161 139 161 0.97

4 16 0.00016 0.0046 18.2 2.4 1 23 167 189 167 189 0.97

5 16 0.00022 0.0064 17.7 1.7 1 23 195 217 195 217 0.99

6 16 1.9e-05 0.00055 21.1 3.6 1 23 223 245 223 245 0.98

7 16 6.2e-05 0.0018 19.5 2.9 1 23 251 273 251 273 0.98

8 16 0.0015 0.042 15.2 3.1 1 23 279 301 279 301 0.97

9 16 0.00018 0.0052 18.0 1.1 3 23 309 329 307 329 0.97

10 16 0.00035 0.01 17.1 3.6 1 23 336 358 336 358 0.98

11 16 0.00013 0.0038 18.5 1.8 1 23 364 386 364 386 0.98

12 16 0.0082 0.24 12.8 5.3 1 23 392 414 392 414 0.96

13 16 0.0022 0.062 14.6 0.7 1 23 420 442 420 442 0.97

14 16 0.0028 0.08 14.3 6.2 1 23 448 470 448 470 0.98

15 16 0.01 0.29 12.5 0.2 1 23 476 498 476 498 0.97

16 16 3.8e-07 1.1e-05 26.4 3.7 1 23 504 526 504 526 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.9e-05	0.00085	20.5	1.6	1	23	83	105	83	105	0.99
2	16	0.0012	0.034	15.4	3.8	1	23	111	133	111	133	0.97
3	16	0.00011	0.0032	18.7	3.3	1	23	139	161	139	161	0.97
4	16	0.00016	0.0046	18.2	2.4	1	23	167	189	167	189	0.97
5	16	0.00022	0.0064	17.7	1.7	1	23	195	217	195	217	0.99
6	16	1.9e-05	0.00055	21.1	3.6	1	23	223	245	223	245	0.98
7	16	6.2e-05	0.0018	19.5	2.9	1	23	251	273	251	273	0.98
8	16	0.0015	0.042	15.2	3.1	1	23	279	301	279	301	0.97
9	16	0.00018	0.0052	18.0	1.1	3	23	309	329	307	329	0.97
10	16	0.00035	0.01	17.1	3.6	1	23	336	358	336	358	0.98
11	16	0.00013	0.0038	18.5	1.8	1	23	364	386	364	386	0.98
12	16	0.0082	0.24	12.8	5.3	1	23	392	414	392	414	0.96
13	16	0.0022	0.062	14.6	0.7	1	23	420	442	420	442	0.97
14	16	0.0028	0.08	14.3	6.2	1	23	448	470	448	470	0.98
15	16	0.01	0.29	12.5	0.2	1	23	476	498	476	498	0.97
16	16	3.8e-07	1.1e-05	26.4	3.7	1	23	504	526	504	526	0.98

Sequence Information

Coding Sequence: ATGGCTCAAGTGCACCCAACAGAAGAATTGAAAATTATGGACGCTAAGGGTAAAGTTTTGGAAACCCTAAATAATTTAAAAGGCGATTGTGAAATTAAAAGTGAAGAGTTGGACGACATGAAATTCAATTTGGAAGATTTGCATCACTCGATTGATATTAAAGAGGAGAGTAATTCTGATGTTTTAATCCGAGAGGATCCCAAGAAAATAAAAAGGAATTTGAAAACCCACATCGGCTTGAATCCATTTACGTGTGGAATTTGCAACTACGAAAGTGCACAAAAATCACATTTAAGGATTCATTTGAGAACCCACTCAGGTGAGAAATTATTTCCTTGTAATATCTGTAAATACAAATGTGGAAGTAAATCAGACTTGCGAAAGCATTTCAAAATTCACACTGGAGAAAAACCATTTGCGTGTGAATTTTGTGACTATAAATGCGCGCAGAAATCAAATTTACAGAGGCATTTAAGTAGACACACGGGTGAAAAACCGTTTGCTTGTGAACTTTGTGACTATAAATGTAGACAAAAGGAAAGTTTAAATGTTCATTTAAAAACACACACTGGCGTGAAACCATTCACCTGTGACATTTGCGACTATAAATGTGCAGCTAAGTCTTATTTAAAAGTACACTTAATGACTCACACTGGGGAAAAACCGTTTGCATGTGATATTTGTGATTATAAATGTACGCGTAGTGGAAGTTTAAAAAAACACAGAAGAACACACACCGGCGAGAAACCATACGCTTGTGACATTTGTGACTATAAATGTGCCCGTAACTCGCGATTAAAGCGCCATTTAAAAACTCACGCTGCGGATAAACCTTTTTTTTGCGAAATGTGTGACTTCAAATGTACACAAAAATCAACTTTACAAGAACACGTAAATATTCACACTGGCGAGAAACCTTTCGGTTGTGGAATTTGTGATCATAAATTTGCTCGTAAAGCAAACTTAAAAATGCACTTGAAAGCCCACATCGGAGCCGACAAACCGTTTGTTTGTGAAATTTGTGACTATAAATGTGGAGTTAAATCGCATTTAAAAGAACACTTAAAAACTCACACCGGTGAGAAGCCATTTAGATGTGAAATTTGTAACCATAAAACTGCACAAAAAGGACAATTAGAAAAGCACTTAAAAATTCACACCTGCGAAAAACCGCATGCTTGTAAATTCTGTGACTATAAATGCGCCGATAAATCGGATTTAAAACAACACTTTAAAATTCATACCGGAGAAAAACCGTTTGCATGCGACTTTTGTGACTATAAAAGTGTCCGTAAGGCGACTTTGAGAATGCATTTAAAAATTCACACCGGTGATAAGTCGTTTGTCTGTGAATTTTGCGACTATAAATGTGTTCGAAAACATACTTTACAAATGCATTTAAAAACGCACTCCGGTGAAAAGCCATTCGCTTGTGAAATATGCGAATATAAAAGTGTATACAAAGCAGGATTAAAAATGCATTTAAAAATCCACACCGGAGAAAAACCGTTTGTTTGTGGTATTTGTGATTATAAGTTTACTCAAAAGTCACATTTACAAAAACATTTAAAAACTCATTCGGCTTAG
Protein Sequence: MAQVHPTEELKIMDAKGKVLETLNNLKGDCEIKSEELDDMKFNLEDLHHSIDIKEESNSDVLIREDPKKIKRNLKTHIGLNPFTCGICNYESAQKSHLRIHLRTHSGEKLFPCNICKYKCGSKSDLRKHFKIHTGEKPFACEFCDYKCAQKSNLQRHLSRHTGEKPFACELCDYKCRQKESLNVHLKTHTGVKPFTCDICDYKCAAKSYLKVHLMTHTGEKPFACDICDYKCTRSGSLKKHRRTHTGEKPYACDICDYKCARNSRLKRHLKTHAADKPFFCEMCDFKCTQKSTLQEHVNIHTGEKPFGCGICDHKFARKANLKMHLKAHIGADKPFVCEICDYKCGVKSHLKEHLKTHTGEKPFRCEICNHKTAQKGQLEKHLKIHTCEKPHACKFCDYKCADKSDLKQHFKIHTGEKPFACDFCDYKSVRKATLRMHLKIHTGDKSFVCEFCDYKCVRKHTLQMHLKTHSGEKPFACEICEYKSVYKAGLKMHLKIHTGEKPFVCGICDYKFTQKSHLQKHLKTHSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293201;
90% Identity: iTF_01293201;
80% Identity: iTF_01293201;