Rful007563.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:5888865-5890274[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.7 3.9e+03 -1.1 0.1 26 46 77 97 72 103 0.73 2 11 0.0061 2.8 9.0 0.0 22 52 101 131 96 131 0.87 3 11 0.0014 0.63 11.1 0.2 22 47 129 154 126 160 0.82 4 11 7.1 3.2e+03 -0.8 0.1 21 45 156 180 152 184 0.73 5 11 0.14 62 4.7 0.0 18 47 181 210 177 215 0.84 6 11 0.29 1.3e+02 3.6 0.1 23 47 214 238 209 245 0.84 7 11 2 9.1e+02 0.9 0.1 21 45 240 264 236 272 0.73 8 11 0.79 3.5e+02 2.2 0.2 21 50 296 325 285 329 0.74 9 11 0.18 80 4.3 0.1 21 44 352 375 344 379 0.77 10 11 0.096 43 5.2 0.0 21 43 380 402 371 407 0.83 11 11 0.0051 2.3 9.3 0.1 21 45 408 432 403 438 0.87
Sequence Information
- Coding Sequence
- ATGGATGGTGTAGAATCTTTGGAAGACTCTCAGAAGTTTGAAGGTTTGCAGATTAAAACGGAAGAAATTGAAATCAAATTAGAAGATCTCCATCATTCGATTGATATTAAAGAGGAAGATTCTTGGGCGGAGGAACGAGAATTGGACGTTAAAGATGAAGCCGCTTCGATTGGGGAATGCAAATTGGATATTGACGGAGTTAAATATCTAAATCAAGAAAAAATTTTCCGTTGTAAGATTTGTGAGTACAAATCTACCCACAGAAACAATTTCTTACGACATTTAAAATGTCACGGAGAGGATAAACCATTTACGTGTGAAATTTGTGGATTCAAATGCACACAAAAAGGAAATTTAAAAGTACACCTACGAATTCATAACGGAGACAAACCATTTACGTGTGAAATTTGCGGTTACAGATGCATACAAAACAGAGACTTAAAAAAGCATTTAAGAACTCATACTGGTGAGAAACCATTTAAGTGTGACTTTTGTGACTACAAATGTGCACAAAAAAACCATTTAGTTGGTCACTTGCGAAGACATACCGGGGAGAAACCGTTTAAATGTGAAATTTGTGGATTTAAATTTGCACTAAAAGCAAATTTAAAAAACCACTTAAAAACCCACACCGACGGAAAACCGTTCACGTGTGAAATTTGCGGCCACAAGTGTGCCCAAAAGCACCACCTTATTTCACACTTAAAAACACACACCGGCGAAAAACCATTTTTATGTGAAATTTGTGACCACAAATGTGCACGTAAATCGCATTTAAAAATACATTTAAGAACCCACACTGGCGAAAAACCGTTCGAGTGTGAATTTTGCGACTTAAAGTTTTCACAATTGGGTGGTTTAAAAATACACTTAACCACACATACCGGCGAGAAACCATTTTCTTGCGGAATTTGTGGTTATAAATGTGTACGAAGGTATCATTACGTATCGCATTTATCAACACATTCCGGTGCTAAACCGTTTGCGTGCGAAACGTGCAACTACAAATCGTCACAAAAAAGTCATTTAATAGAACATTTAAGAACCCACACCGGTGAGAAACCGTTTACGTGTGAAATCTGTGGTATGAAATGTACACGAAGGAGTGGTTTAAAAACACATTTACGGACCCATTCTGGTGAGAAACCGTTCATGTGCGAAATTTGTGATTACAAATGCGCAGATAAGCGTAATTTAAAAATTCATACGTTATCTCATACTGGTGAGAAACCGTTTGCTTGTAAAATTTGCGATTACAGTAGTGTAAGCCAAAGTAACGTTAAAAGACATTTAAAATCACATGCACGAAAAAAAGTTATTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAGCGCTCCATGA
- Protein Sequence
- MDGVESLEDSQKFEGLQIKTEEIEIKLEDLHHSIDIKEEDSWAEERELDVKDEAASIGECKLDIDGVKYLNQEKIFRCKICEYKSTHRNNFLRHLKCHGEDKPFTCEICGFKCTQKGNLKVHLRIHNGDKPFTCEICGYRCIQNRDLKKHLRTHTGEKPFKCDFCDYKCAQKNHLVGHLRRHTGEKPFKCEICGFKFALKANLKNHLKTHTDGKPFTCEICGHKCAQKHHLISHLKTHTGEKPFLCEICDHKCARKSHLKIHLRTHTGEKPFECEFCDLKFSQLGGLKIHLTTHTGEKPFSCGICGYKCVRRYHYVSHLSTHSGAKPFACETCNYKSSQKSHLIEHLRTHTGEKPFTCEICGMKCTRRSGLKTHLRTHSGEKPFMCEICDYKCADKRNLKIHTLSHTGEKPFACKICDYSSVSQSNVKRHLKSHARKKVINXXXXXXXXXXXXXXXXXXXXXXXXDSAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292142;
- 90% Identity
- iTF_01292142;
- 80% Identity
- iTF_01292142;