Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:5888865-5890274[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.37 11 7.6 7.5 1 21 76 96 76 98 0.95

2 13 4.3e-06 0.00012 23.1 2.0 1 23 104 126 104 126 0.98

3 13 6.7e-06 0.00019 22.5 3.1 1 23 132 154 132 154 0.99

4 13 0.0049 0.14 13.5 5.5 1 23 160 182 160 182 0.99

5 13 2.8e-06 8e-05 23.7 1.0 1 23 188 210 188 210 0.99

6 13 0.0011 0.031 15.6 8.4 1 23 216 238 216 238 0.99

7 13 0.0003 0.0085 17.3 6.7 1 23 244 266 244 266 0.96

8 13 0.00013 0.0039 18.4 0.4 1 23 272 294 272 294 0.98

9 13 0.003 0.088 14.1 4.5 1 23 300 322 300 322 0.98

10 13 8.8e-05 0.0025 19.0 2.6 1 23 328 350 328 350 0.97

11 13 4.6e-06 0.00013 23.0 3.1 1 23 356 378 356 378 0.99

12 13 0.00023 0.0067 17.7 2.0 1 23 384 406 384 406 0.97

13 13 3.9e-05 0.0011 20.1 0.8 1 23 412 434 412 434 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.37	11	7.6	7.5	1	21	76	96	76	98	0.95
2	13	4.3e-06	0.00012	23.1	2.0	1	23	104	126	104	126	0.98
3	13	6.7e-06	0.00019	22.5	3.1	1	23	132	154	132	154	0.99
4	13	0.0049	0.14	13.5	5.5	1	23	160	182	160	182	0.99
5	13	2.8e-06	8e-05	23.7	1.0	1	23	188	210	188	210	0.99
6	13	0.0011	0.031	15.6	8.4	1	23	216	238	216	238	0.99
7	13	0.0003	0.0085	17.3	6.7	1	23	244	266	244	266	0.96
8	13	0.00013	0.0039	18.4	0.4	1	23	272	294	272	294	0.98
9	13	0.003	0.088	14.1	4.5	1	23	300	322	300	322	0.98
10	13	8.8e-05	0.0025	19.0	2.6	1	23	328	350	328	350	0.97
11	13	4.6e-06	0.00013	23.0	3.1	1	23	356	378	356	378	0.99
12	13	0.00023	0.0067	17.7	2.0	1	23	384	406	384	406	0.97
13	13	3.9e-05	0.0011	20.1	0.8	1	23	412	434	412	434	0.97

Sequence Information

Coding Sequence: ATGGATGGTGTAGAATCTTTGGAAGACTCTCAGAAGTTTGAAGGTTTGCAGATTAAAACGGAAGAAATTGAAATCAAATTAGAAGATCTCCATCATTCGATTGATATTAAAGAGGAAGATTCTTGGGCGGAGGAACGAGAATTGGACGTTAAAGATGAAGCCGCTTCGATTGGGGAATGCAAATTGGATATTGACGGAGTTAAATATCTAAATCAAGAAAAAATTTTCCGTTGTAAGATTTGTGAGTACAAATCTACCCACAGAAACAATTTCTTACGACATTTAAAATGTCACGGAGAGGATAAACCATTTACGTGTGAAATTTGTGGATTCAAATGCACACAAAAAGGAAATTTAAAAGTACACCTACGAATTCATAACGGAGACAAACCATTTACGTGTGAAATTTGCGGTTACAGATGCATACAAAACAGAGACTTAAAAAAGCATTTAAGAACTCATACTGGTGAGAAACCATTTAAGTGTGACTTTTGTGACTACAAATGTGCACAAAAAAACCATTTAGTTGGTCACTTGCGAAGACATACCGGGGAGAAACCGTTTAAATGTGAAATTTGTGGATTTAAATTTGCACTAAAAGCAAATTTAAAAAACCACTTAAAAACCCACACCGACGGAAAACCGTTCACGTGTGAAATTTGCGGCCACAAGTGTGCCCAAAAGCACCACCTTATTTCACACTTAAAAACACACACCGGCGAAAAACCATTTTTATGTGAAATTTGTGACCACAAATGTGCACGTAAATCGCATTTAAAAATACATTTAAGAACCCACACTGGCGAAAAACCGTTCGAGTGTGAATTTTGCGACTTAAAGTTTTCACAATTGGGTGGTTTAAAAATACACTTAACCACACATACCGGCGAGAAACCATTTTCTTGCGGAATTTGTGGTTATAAATGTGTACGAAGGTATCATTACGTATCGCATTTATCAACACATTCCGGTGCTAAACCGTTTGCGTGCGAAACGTGCAACTACAAATCGTCACAAAAAAGTCATTTAATAGAACATTTAAGAACCCACACCGGTGAGAAACCGTTTACGTGTGAAATCTGTGGTATGAAATGTACACGAAGGAGTGGTTTAAAAACACATTTACGGACCCATTCTGGTGAGAAACCGTTCATGTGCGAAATTTGTGATTACAAATGCGCAGATAAGCGTAATTTAAAAATTCATACGTTATCTCATACTGGTGAGAAACCGTTTGCTTGTAAAATTTGCGATTACAGTAGTGTAAGCCAAAGTAACGTTAAAAGACATTTAAAATCACATGCACGAAAAAAAGTTATTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAGCGCTCCATGA
Protein Sequence: MDGVESLEDSQKFEGLQIKTEEIEIKLEDLHHSIDIKEEDSWAEERELDVKDEAASIGECKLDIDGVKYLNQEKIFRCKICEYKSTHRNNFLRHLKCHGEDKPFTCEICGFKCTQKGNLKVHLRIHNGDKPFTCEICGYRCIQNRDLKKHLRTHTGEKPFKCDFCDYKCAQKNHLVGHLRRHTGEKPFKCEICGFKFALKANLKNHLKTHTDGKPFTCEICGHKCAQKHHLISHLKTHTGEKPFLCEICDHKCARKSHLKIHLRTHTGEKPFECEFCDLKFSQLGGLKIHLTTHTGEKPFSCGICGYKCVRRYHYVSHLSTHSGAKPFACETCNYKSSQKSHLIEHLRTHTGEKPFTCEICGMKCTRRSGLKTHLRTHSGEKPFMCEICDYKCADKRNLKIHTLSHTGEKPFACKICDYSSVSQSNVKRHLKSHARKKVINXXXXXXXXXXXXXXXXXXXXXXXXDSAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293200;
90% Identity: iTF_01293200;
80% Identity: iTF_01293200;