Rful004969.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:22822771-22824222[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.024 11 7.1 0.1 21 47 91 117 85 122 0.80 2 13 1.4 6.2e+02 1.5 0.0 21 48 119 146 116 148 0.87 3 13 0.22 1e+02 4.0 0.1 21 45 148 172 143 180 0.83 4 13 3.4 1.6e+03 0.2 0.1 26 52 181 207 175 209 0.82 5 13 0.78 3.5e+02 2.3 0.1 21 46 204 229 200 235 0.78 6 13 0.00036 0.16 12.9 0.3 21 45 232 256 228 259 0.92 7 13 0.031 14 6.7 0.1 21 47 260 286 256 291 0.85 8 13 0.33 1.5e+02 3.5 0.1 21 45 288 312 284 315 0.88 9 13 0.0053 2.4 9.2 0.1 21 46 316 341 312 349 0.90 10 13 0.76 3.4e+02 2.3 0.1 22 45 345 368 342 375 0.85 11 13 1.9 8.4e+02 1.0 0.1 21 52 400 431 396 433 0.79 12 13 2.1 9.6e+02 0.9 0.0 22 46 429 453 426 459 0.77 13 13 0.014 6.1 7.9 0.1 21 46 456 481 452 483 0.89
Sequence Information
- Coding Sequence
- ATGGAAAACAGTAGCAATACTTTGAAGACTCCGTATAATTCAAGCTGTAAAGTGGAAGTTAAAACGGAGGAATCAGAAGACTTAAAATTTAATTTAGAAGAACTGCATCAATCAATAGATATTAAGGAGGACGAGAGAGCTGAAATAATACTAATAAAGGAGAAACCAGCAAAAAATACTGATATTAGAGGGAAATTGTTTCATTGTGAGAGTTGTGAGTATAAATCTACACGTATATCATTATTAAAAAGACATTTTAAAACTCACATGGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACGAAAATCAAACTTAAAAGAACATTTGAAAACTCACACTGGTGAAAAACCGTTTGCTTGTGTTATGTGTGACTATAAAAGTGCTCAAAAATCATCGTTGAAGCTACATTTAAAAGCTGCTCACACAGGAGAAAGACCGTTTGCTTGTTTGATATGTGGTTATAAATGTGCTCGCAGTTCAGATTTAAAAGAACATTTGAGAACTCACACAGGGGATAAACTATTTGCTTGTGAGATTTGCGACTATAAGTGTTGTCAAAAATCATCTTTAAAGGGGCATTTAAGAATTCATACAGGTGAGAAACCATTTGCTTGTGAGATTTGTGACTACAAATGTTCTCATAAATCATCACTAAAAGAACATTTAAAAACTCACACAGGGGAGAAACCGTTTGCTTGTCAGATTTGTTACTATAAATGTTCACAAAGATCAAATTTAAAAGAACATTTAAAAACTCACACAGGCGAGAGACCGTTTACTTGTGTTATTTGCGATTATAAATGTGCTCAAAAAGTATCTTTAAAAGAACATTTAAAAACTCATACAAGGGAGAAACCGTTCGCTTGTGAGATTTGTGACTATAAATGTGCTCAAAAATTATCTTTAAAGGAACATTTGAAAACCCACACAGGGGAGAAACCGTTCACATGTGAGATTTGCGGCCATAAATGTGCACAAAGATCAAATTTTAAAGAACATTTAAAAATTCACACCAGGGAGAAAGAATTTGCTTGTGTTATTTGTAAATATAAATGTAAACAAAAATCATCGTTAAAAGAACACTTAAAAACTCACACTGGCAAAAAATCGTTTTCTTGTGTTATTTGCGACTTGAAATATGCACACAAATCATCGTTAAAAGATCATTACAAAAATCACACAGGCGAGAAACCTTTTGTTTGTGAGAGTTGTGACTATAAGTGTGCTCGAAAATCATCTTTAAAAGAACACTTAAAAATACACACTGGAGAAAAACCGTTTAGTTGTGAAACTTGTGACTATAAATGTGCACGCAAATCGGATTTAAAAGAACATTTAAAAACTCACACAGGAGAAAAACCGTTTGGTTGTGGAATTTGTGAGTATAAATGCGCACAAAGGTCGCAGTTAAAAAGACATTTAAAAATTCACACTTAA
- Protein Sequence
- MENSSNTLKTPYNSSCKVEVKTEESEDLKFNLEELHQSIDIKEDERAEIILIKEKPAKNTDIRGKLFHCESCEYKSTRISLLKRHFKTHMGEKPFACEICDYKCARKSNLKEHLKTHTGEKPFACVMCDYKSAQKSSLKLHLKAAHTGERPFACLICGYKCARSSDLKEHLRTHTGDKLFACEICDYKCCQKSSLKGHLRIHTGEKPFACEICDYKCSHKSSLKEHLKTHTGEKPFACQICYYKCSQRSNLKEHLKTHTGERPFTCVICDYKCAQKVSLKEHLKTHTREKPFACEICDYKCAQKLSLKEHLKTHTGEKPFTCEICGHKCAQRSNFKEHLKIHTREKEFACVICKYKCKQKSSLKEHLKTHTGKKSFSCVICDLKYAHKSSLKDHYKNHTGEKPFVCESCDYKCARKSSLKEHLKIHTGEKPFSCETCDYKCARKSDLKEHLKTHTGEKPFGCGICEYKCAQRSQLKRHLKIHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292104;
- 90% Identity
- iTF_01292104;
- 80% Identity
- iTF_01292104;