Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:22822771-22824222[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.082 2.4 9.6 4.8 1 23 67 89 67 89 0.98

2 15 7.8e-06 0.00022 22.3 2.3 1 23 95 117 95 117 0.97

3 15 0.0034 0.098 14.0 0.2 1 23 123 146 123 146 0.94

4 15 1.3e-05 0.00037 21.6 1.3 1 23 152 174 152 174 0.97

5 15 0.00031 0.009 17.3 4.0 1 23 180 202 180 202 0.97

6 15 8e-05 0.0023 19.1 4.9 1 23 208 230 208 230 0.97

7 15 0.00024 0.0068 17.6 4.1 1 23 236 258 236 258 0.97

8 15 0.00024 0.0068 17.6 2.2 1 23 264 286 264 286 0.99

9 15 0.00055 0.016 16.5 1.8 1 23 292 314 292 314 0.97

10 15 0.00018 0.0052 18.0 4.4 1 23 320 342 320 342 0.98

11 15 0.0004 0.011 16.9 4.1 1 23 348 370 348 370 0.97

12 15 0.00058 0.017 16.4 2.5 1 23 376 398 376 398 0.97

13 15 0.00022 0.0063 17.8 2.3 1 23 404 426 404 426 0.98

14 15 6.2e-05 0.0018 19.5 3.5 1 23 432 454 432 454 0.98

15 15 0.00045 0.013 16.8 1.8 3 23 462 482 460 482 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.082	2.4	9.6	4.8	1	23	67	89	67	89	0.98
2	15	7.8e-06	0.00022	22.3	2.3	1	23	95	117	95	117	0.97
3	15	0.0034	0.098	14.0	0.2	1	23	123	146	123	146	0.94
4	15	1.3e-05	0.00037	21.6	1.3	1	23	152	174	152	174	0.97
5	15	0.00031	0.009	17.3	4.0	1	23	180	202	180	202	0.97
6	15	8e-05	0.0023	19.1	4.9	1	23	208	230	208	230	0.97
7	15	0.00024	0.0068	17.6	4.1	1	23	236	258	236	258	0.97
8	15	0.00024	0.0068	17.6	2.2	1	23	264	286	264	286	0.99
9	15	0.00055	0.016	16.5	1.8	1	23	292	314	292	314	0.97
10	15	0.00018	0.0052	18.0	4.4	1	23	320	342	320	342	0.98
11	15	0.0004	0.011	16.9	4.1	1	23	348	370	348	370	0.97
12	15	0.00058	0.017	16.4	2.5	1	23	376	398	376	398	0.97
13	15	0.00022	0.0063	17.8	2.3	1	23	404	426	404	426	0.98
14	15	6.2e-05	0.0018	19.5	3.5	1	23	432	454	432	454	0.98
15	15	0.00045	0.013	16.8	1.8	3	23	462	482	460	482	0.98

Sequence Information

Coding Sequence: ATGGAAAACAGTAGCAATACTTTGAAGACTCCGTATAATTCAAGCTGTAAAGTGGAAGTTAAAACGGAGGAATCAGAAGACTTAAAATTTAATTTAGAAGAACTGCATCAATCAATAGATATTAAGGAGGACGAGAGAGCTGAAATAATACTAATAAAGGAGAAACCAGCAAAAAATACTGATATTAGAGGGAAATTGTTTCATTGTGAGAGTTGTGAGTATAAATCTACACGTATATCATTATTAAAAAGACATTTTAAAACTCACATGGGCGAGAAACCTTTTGCTTGTGAGATTTGTGACTATAAATGTGCACGAAAATCAAACTTAAAAGAACATTTGAAAACTCACACTGGTGAAAAACCGTTTGCTTGTGTTATGTGTGACTATAAAAGTGCTCAAAAATCATCGTTGAAGCTACATTTAAAAGCTGCTCACACAGGAGAAAGACCGTTTGCTTGTTTGATATGTGGTTATAAATGTGCTCGCAGTTCAGATTTAAAAGAACATTTGAGAACTCACACAGGGGATAAACTATTTGCTTGTGAGATTTGCGACTATAAGTGTTGTCAAAAATCATCTTTAAAGGGGCATTTAAGAATTCATACAGGTGAGAAACCATTTGCTTGTGAGATTTGTGACTACAAATGTTCTCATAAATCATCACTAAAAGAACATTTAAAAACTCACACAGGGGAGAAACCGTTTGCTTGTCAGATTTGTTACTATAAATGTTCACAAAGATCAAATTTAAAAGAACATTTAAAAACTCACACAGGCGAGAGACCGTTTACTTGTGTTATTTGCGATTATAAATGTGCTCAAAAAGTATCTTTAAAAGAACATTTAAAAACTCATACAAGGGAGAAACCGTTCGCTTGTGAGATTTGTGACTATAAATGTGCTCAAAAATTATCTTTAAAGGAACATTTGAAAACCCACACAGGGGAGAAACCGTTCACATGTGAGATTTGCGGCCATAAATGTGCACAAAGATCAAATTTTAAAGAACATTTAAAAATTCACACCAGGGAGAAAGAATTTGCTTGTGTTATTTGTAAATATAAATGTAAACAAAAATCATCGTTAAAAGAACACTTAAAAACTCACACTGGCAAAAAATCGTTTTCTTGTGTTATTTGCGACTTGAAATATGCACACAAATCATCGTTAAAAGATCATTACAAAAATCACACAGGCGAGAAACCTTTTGTTTGTGAGAGTTGTGACTATAAGTGTGCTCGAAAATCATCTTTAAAAGAACACTTAAAAATACACACTGGAGAAAAACCGTTTAGTTGTGAAACTTGTGACTATAAATGTGCACGCAAATCGGATTTAAAAGAACATTTAAAAACTCACACAGGAGAAAAACCGTTTGGTTGTGGAATTTGTGAGTATAAATGCGCACAAAGGTCGCAGTTAAAAAGACATTTAAAAATTCACACTTAA
Protein Sequence: MENSSNTLKTPYNSSCKVEVKTEESEDLKFNLEELHQSIDIKEDERAEIILIKEKPAKNTDIRGKLFHCESCEYKSTRISLLKRHFKTHMGEKPFACEICDYKCARKSNLKEHLKTHTGEKPFACVMCDYKSAQKSSLKLHLKAAHTGERPFACLICGYKCARSSDLKEHLRTHTGDKLFACEICDYKCCQKSSLKGHLRIHTGEKPFACEICDYKCSHKSSLKEHLKTHTGEKPFACQICYYKCSQRSNLKEHLKTHTGERPFTCVICDYKCAQKVSLKEHLKTHTREKPFACEICDYKCAQKLSLKEHLKTHTGEKPFTCEICGHKCAQRSNFKEHLKIHTREKEFACVICKYKCKQKSSLKEHLKTHTGKKSFSCVICDLKYAHKSSLKDHYKNHTGEKPFVCESCDYKCARKSSLKEHLKIHTGEKPFSCETCDYKCARKSDLKEHLKTHTGEKPFGCGICEYKCAQRSQLKRHLKIHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293195;
90% Identity: iTF_01293195;
80% Identity: iTF_01293195;