Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:13303205-13304998[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7.3 3.3e+03 -0.9 0.0 22 45 89 112 84 120 0.74

2 17 0.31 1.4e+02 3.5 0.0 21 45 116 140 112 144 0.78

3 17 0.073 33 5.5 0.1 21 52 144 175 140 177 0.85

4 17 2.6 1.2e+03 0.6 0.1 21 44 172 195 169 199 0.73

5 17 0.044 20 6.3 0.1 21 51 200 230 192 233 0.84

6 17 0.092 42 5.2 0.0 21 52 228 259 225 261 0.86

7 17 0.66 3e+02 2.5 0.0 22 47 257 282 252 288 0.76

8 17 0.72 3.2e+02 2.4 0.0 21 45 284 308 280 317 0.86

9 17 1.3 5.7e+02 1.6 0.2 21 44 340 363 324 367 0.78

10 17 0.1 45 5.1 0.1 21 45 368 392 364 398 0.82

11 17 0.52 2.3e+02 2.8 0.0 22 52 397 427 392 429 0.78

12 17 0.64 2.9e+02 2.5 0.0 21 51 424 454 420 457 0.74

13 17 0.3 1.4e+02 3.6 0.0 21 45 452 476 448 479 0.89

14 17 0.00055 0.25 12.4 0.0 21 47 480 506 476 511 0.86

15 17 0.35 1.6e+02 3.4 0.0 21 45 508 532 505 535 0.77

16 17 0.21 95 4.1 0.1 21 45 536 560 532 563 0.89

17 17 0.02 9 7.4 0.1 21 45 564 588 560 592 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7.3	3.3e+03	-0.9	0.0	22	45	89	112	84	120	0.74
2	17	0.31	1.4e+02	3.5	0.0	21	45	116	140	112	144	0.78
3	17	0.073	33	5.5	0.1	21	52	144	175	140	177	0.85
4	17	2.6	1.2e+03	0.6	0.1	21	44	172	195	169	199	0.73
5	17	0.044	20	6.3	0.1	21	51	200	230	192	233	0.84
6	17	0.092	42	5.2	0.0	21	52	228	259	225	261	0.86
7	17	0.66	3e+02	2.5	0.0	22	47	257	282	252	288	0.76
8	17	0.72	3.2e+02	2.4	0.0	21	45	284	308	280	317	0.86
9	17	1.3	5.7e+02	1.6	0.2	21	44	340	363	324	367	0.78
10	17	0.1	45	5.1	0.1	21	45	368	392	364	398	0.82
11	17	0.52	2.3e+02	2.8	0.0	22	52	397	427	392	429	0.78
12	17	0.64	2.9e+02	2.5	0.0	21	51	424	454	420	457	0.74
13	17	0.3	1.4e+02	3.6	0.0	21	45	452	476	448	479	0.89
14	17	0.00055	0.25	12.4	0.0	21	47	480	506	476	511	0.86
15	17	0.35	1.6e+02	3.4	0.0	21	45	508	532	505	535	0.77
16	17	0.21	95	4.1	0.1	21	45	536	560	532	563	0.89
17	17	0.02	9	7.4	0.1	21	45	564	588	560	592	0.84

Sequence Information

Coding Sequence: ATGGAAAACATTAACACAAATATTTTGGAAACTCCGTTTAGTTCAGGGTGCAAAGTGGAAGTTAAAACAGAGGAATTTGAAGAGATAAAATTTAATTTAGAAGATTTGCATCATTCATTAGATATTAAGGAAGAAGAAAGAGATGGAACAGCACAAATAAAGGAAAAACCTGGTATTCGAAAGAAATTGTTTCGTTGTGAAGTGTGCGGTTATAAATGTGCACATAAGTCGCATTTAAAACGACATTTAATAACTCACACAGGGAATAAACCGTTTGCATGTGAGATTTGTGAGTACAAATGTGCATACAGACATCATTTAAAAGGACACTTAAAAACTCATACTGGCGAAAAACCATTTGCTTGTGAGATTTGTGAATATAAATCAATACAAAAATCATCTTTAAAGGACCATTTAAAAACCCACACAGGTGAGAAACCGTTTTCTTGTGAGTTTTGTGATTATAAATGCGCACAGAGATCAACTTTAAAGAGACATTTAAAAACTCATACAGGTGAAAAACCGTTTGTTTGTGACATTTGTGACTATAAATGTGCCCATAAGTCAAGTTTAAAAGTACATTTAAAAACCCATACAGGTGAGAAACCCTACGCTTGTGAGATTTGTGAACATAAATCAATACAAAAATCAGCTTTAAGAGAGCATTTGAAAACCCACACAGGAGAAAAACCTTTTATTTGTAAGATTTGTGACTGTAAATATGCCCAAAAGTCATCTTTAAAAGAACATTTAAAAAGTCACACGGGCCAAAAACCTTTTGTTTGTGAAATTTGTGATTATAAATGTGCGAAAAAATCAAATTTAAATGATCATTTAAAAACTCACACCGGGGAAAAACCGTTTGGATGTCAGATTTGCGACTATAAATGCGCACAAAAGTCATCTTTAAACTCGCATTTAAAAACTCACCCAGGGAAGAAGTCTTTTGTTTGTGAGATTTGTGACTATAAATGTGTTCGAAAATCGTCCTTAACAGAACATTTAAAAAGTCACCCAGGGGAAAAACCGTTTGCTTGTGACGTTTGCGACTATAAATGTGTTAAAAAATCATATTTAAAAGAACATTTGAAAACTCACACCGGGGAAAAACCGTTCGGGTGTGAGATTTGTGACTATAAATGTACACGCAGATCAAATTTAAAAAGTCATTTAAAAACTCACTCAGGGGAGAAATCGTTTGCTTGCGAAATTTGTGAGTACAAATCAGCACGCAGTTCAAATTTAATAAATCATTTAAAAACTCACTCGGGGGAAAAACCGTTTGTTTGTGACATTTGTGACTATAAATGTGTTCATAAATCATTTTTAAAGGAACATTTAAAGACTCACACGGGTGAAAAACCATTTGTTTGTGCGATTTGTGACTTTAAATATGCTCAAAAATCATCTTTAAAAGAACATTTAAAAACCCACTCAGGGGAAAAACCTTTTACTTGTAAGATTTGTTACTATAAGTGCGCTCAAAAGTCGTCTTTAAAAGGACACTTAAAAACTCATACTGGCGAAAAACCATTTGCTTGTGAGATTTGTGAATATAAATCAATACAAAAATCATCTTTAAAGGACCATTTAAAAACCCACACAGGTGAGAAACCGTTTTCTTGTGAGTTTTGTGATTATAAATGCGCACAGAGATCAACTTTAAAGAGACATTTAAAAACTCATACAGGTGAAAAACCGTTTGTTTGTGACATTTGTGACTATAAATGTGTTCAAAAATCGTCTTTAAAACGCCATTTGAAAACTCACTCTCAAACCTTGATTGGCTGTTAA
Protein Sequence: MENINTNILETPFSSGCKVEVKTEEFEEIKFNLEDLHHSLDIKEEERDGTAQIKEKPGIRKKLFRCEVCGYKCAHKSHLKRHLITHTGNKPFACEICEYKCAYRHHLKGHLKTHTGEKPFACEICEYKSIQKSSLKDHLKTHTGEKPFSCEFCDYKCAQRSTLKRHLKTHTGEKPFVCDICDYKCAHKSSLKVHLKTHTGEKPYACEICEHKSIQKSALREHLKTHTGEKPFICKICDCKYAQKSSLKEHLKSHTGQKPFVCEICDYKCAKKSNLNDHLKTHTGEKPFGCQICDYKCAQKSSLNSHLKTHPGKKSFVCEICDYKCVRKSSLTEHLKSHPGEKPFACDVCDYKCVKKSYLKEHLKTHTGEKPFGCEICDYKCTRRSNLKSHLKTHSGEKSFACEICEYKSARSSNLINHLKTHSGEKPFVCDICDYKCVHKSFLKEHLKTHTGEKPFVCAICDFKYAQKSSLKEHLKTHSGEKPFTCKICYYKCAQKSSLKGHLKTHTGEKPFACEICEYKSIQKSSLKDHLKTHTGEKPFSCEFCDYKCAQRSTLKRHLKTHTGEKPFVCDICDYKCVQKSSLKRHLKTHSQTLIGC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292024;
90% Identity: iTF_01292024;
80% Identity: iTF_01292024;