Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:13303205-13304998[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 7.3e-05 0.0021 19.2 6.9 1 23 64 86 64 86 0.98

2 19 0.033 0.94 10.9 6.1 1 23 92 114 92 114 0.97

3 19 0.00026 0.0076 17.5 0.6 1 23 120 142 120 142 0.97

4 19 0.00023 0.0066 17.7 5.1 1 23 148 170 148 170 0.98

5 19 5.2e-05 0.0015 19.7 4.1 1 23 176 198 176 198 0.98

6 19 0.00073 0.021 16.1 0.9 1 23 204 226 204 226 0.98

7 19 0.0001 0.003 18.8 3.0 1 23 232 254 232 254 0.98

8 19 2.2e-05 0.00063 20.9 2.3 1 23 260 282 260 282 0.98

9 19 0.00029 0.0083 17.4 2.6 3 23 290 310 288 310 0.98

10 19 3.7e-05 0.0011 20.2 2.2 1 23 316 338 316 338 0.98

11 19 0.00041 0.012 16.9 2.9 1 23 344 366 344 366 0.97

12 19 4.9e-05 0.0014 19.8 3.7 3 23 374 394 372 394 0.98

13 19 6e-05 0.0017 19.5 0.3 1 23 400 422 400 422 0.97

14 19 0.00066 0.019 16.2 5.0 1 23 428 450 428 450 0.98

15 19 2.3e-05 0.00068 20.8 0.7 1 23 456 478 456 478 0.98

16 19 0.0013 0.037 15.3 4.6 1 23 484 506 484 506 0.99

17 19 0.00026 0.0076 17.5 0.6 1 23 512 534 512 534 0.97

18 19 0.00023 0.0066 17.7 5.1 1 23 540 562 540 562 0.98

19 19 7.7e-06 0.00022 22.3 3.3 1 23 568 590 568 590 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	7.3e-05	0.0021	19.2	6.9	1	23	64	86	64	86	0.98
2	19	0.033	0.94	10.9	6.1	1	23	92	114	92	114	0.97
3	19	0.00026	0.0076	17.5	0.6	1	23	120	142	120	142	0.97
4	19	0.00023	0.0066	17.7	5.1	1	23	148	170	148	170	0.98
5	19	5.2e-05	0.0015	19.7	4.1	1	23	176	198	176	198	0.98
6	19	0.00073	0.021	16.1	0.9	1	23	204	226	204	226	0.98
7	19	0.0001	0.003	18.8	3.0	1	23	232	254	232	254	0.98
8	19	2.2e-05	0.00063	20.9	2.3	1	23	260	282	260	282	0.98
9	19	0.00029	0.0083	17.4	2.6	3	23	290	310	288	310	0.98
10	19	3.7e-05	0.0011	20.2	2.2	1	23	316	338	316	338	0.98
11	19	0.00041	0.012	16.9	2.9	1	23	344	366	344	366	0.97
12	19	4.9e-05	0.0014	19.8	3.7	3	23	374	394	372	394	0.98
13	19	6e-05	0.0017	19.5	0.3	1	23	400	422	400	422	0.97
14	19	0.00066	0.019	16.2	5.0	1	23	428	450	428	450	0.98
15	19	2.3e-05	0.00068	20.8	0.7	1	23	456	478	456	478	0.98
16	19	0.0013	0.037	15.3	4.6	1	23	484	506	484	506	0.99
17	19	0.00026	0.0076	17.5	0.6	1	23	512	534	512	534	0.97
18	19	0.00023	0.0066	17.7	5.1	1	23	540	562	540	562	0.98
19	19	7.7e-06	0.00022	22.3	3.3	1	23	568	590	568	590	0.98

Sequence Information

Coding Sequence: ATGGAAAACATTAACACAAATATTTTGGAAACTCCGTTTAGTTCAGGGTGCAAAGTGGAAGTTAAAACAGAGGAATTTGAAGAGATAAAATTTAATTTAGAAGATTTGCATCATTCATTAGATATTAAGGAAGAAGAAAGAGATGGAACAGCACAAATAAAGGAAAAACCTGGTATTCGAAAGAAATTGTTTCGTTGTGAAGTGTGCGGTTATAAATGTGCACATAAGTCGCATTTAAAACGACATTTAATAACTCACACAGGGAATAAACCGTTTGCATGTGAGATTTGTGAGTACAAATGTGCATACAGACATCATTTAAAAGGACACTTAAAAACTCATACTGGCGAAAAACCATTTGCTTGTGAGATTTGTGAATATAAATCAATACAAAAATCATCTTTAAAGGACCATTTAAAAACCCACACAGGTGAGAAACCGTTTTCTTGTGAGTTTTGTGATTATAAATGCGCACAGAGATCAACTTTAAAGAGACATTTAAAAACTCATACAGGTGAAAAACCGTTTGTTTGTGACATTTGTGACTATAAATGTGCCCATAAGTCAAGTTTAAAAGTACATTTAAAAACCCATACAGGTGAGAAACCCTACGCTTGTGAGATTTGTGAACATAAATCAATACAAAAATCAGCTTTAAGAGAGCATTTGAAAACCCACACAGGAGAAAAACCTTTTATTTGTAAGATTTGTGACTGTAAATATGCCCAAAAGTCATCTTTAAAAGAACATTTAAAAAGTCACACGGGCCAAAAACCTTTTGTTTGTGAAATTTGTGATTATAAATGTGCGAAAAAATCAAATTTAAATGATCATTTAAAAACTCACACCGGGGAAAAACCGTTTGGATGTCAGATTTGCGACTATAAATGCGCACAAAAGTCATCTTTAAACTCGCATTTAAAAACTCACCCAGGGAAGAAGTCTTTTGTTTGTGAGATTTGTGACTATAAATGTGTTCGAAAATCGTCCTTAACAGAACATTTAAAAAGTCACCCAGGGGAAAAACCGTTTGCTTGTGACGTTTGCGACTATAAATGTGTTAAAAAATCATATTTAAAAGAACATTTGAAAACTCACACCGGGGAAAAACCGTTCGGGTGTGAGATTTGTGACTATAAATGTACACGCAGATCAAATTTAAAAAGTCATTTAAAAACTCACTCAGGGGAGAAATCGTTTGCTTGCGAAATTTGTGAGTACAAATCAGCACGCAGTTCAAATTTAATAAATCATTTAAAAACTCACTCGGGGGAAAAACCGTTTGTTTGTGACATTTGTGACTATAAATGTGTTCATAAATCATTTTTAAAGGAACATTTAAAGACTCACACGGGTGAAAAACCATTTGTTTGTGCGATTTGTGACTTTAAATATGCTCAAAAATCATCTTTAAAAGAACATTTAAAAACCCACTCAGGGGAAAAACCTTTTACTTGTAAGATTTGTTACTATAAGTGCGCTCAAAAGTCGTCTTTAAAAGGACACTTAAAAACTCATACTGGCGAAAAACCATTTGCTTGTGAGATTTGTGAATATAAATCAATACAAAAATCATCTTTAAAGGACCATTTAAAAACCCACACAGGTGAGAAACCGTTTTCTTGTGAGTTTTGTGATTATAAATGCGCACAGAGATCAACTTTAAAGAGACATTTAAAAACTCATACAGGTGAAAAACCGTTTGTTTGTGACATTTGTGACTATAAATGTGTTCAAAAATCGTCTTTAAAACGCCATTTGAAAACTCACTCTCAAACCTTGATTGGCTGTTAA
Protein Sequence: MENINTNILETPFSSGCKVEVKTEEFEEIKFNLEDLHHSLDIKEEERDGTAQIKEKPGIRKKLFRCEVCGYKCAHKSHLKRHLITHTGNKPFACEICEYKCAYRHHLKGHLKTHTGEKPFACEICEYKSIQKSSLKDHLKTHTGEKPFSCEFCDYKCAQRSTLKRHLKTHTGEKPFVCDICDYKCAHKSSLKVHLKTHTGEKPYACEICEHKSIQKSALREHLKTHTGEKPFICKICDCKYAQKSSLKEHLKSHTGQKPFVCEICDYKCAKKSNLNDHLKTHTGEKPFGCQICDYKCAQKSSLNSHLKTHPGKKSFVCEICDYKCVRKSSLTEHLKSHPGEKPFACDVCDYKCVKKSYLKEHLKTHTGEKPFGCEICDYKCTRRSNLKSHLKTHSGEKSFACEICEYKSARSSNLINHLKTHSGEKPFVCDICDYKCVHKSFLKEHLKTHTGEKPFVCAICDFKYAQKSSLKEHLKTHSGEKPFTCKICYYKCAQKSSLKGHLKTHTGEKPFACEICEYKSIQKSSLKDHLKTHTGEKPFSCEFCDYKCAQRSTLKRHLKTHTGEKPFVCDICDYKCVQKSSLKRHLKTHSQTLIGC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293193;
90% Identity: iTF_01293193;
80% Identity: iTF_01293193;