Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996559.1:25461287-25469049[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5 2.2e+03 -0.3 0.3 23 32 49 58 47 74 0.72

2 16 0.00036 0.16 12.9 0.1 21 52 75 106 64 108 0.87

3 16 0.91 4.1e+02 2.0 0.4 22 46 104 128 101 134 0.69

4 16 2.9 1.3e+03 0.4 0.0 21 46 131 156 127 158 0.86

5 16 0.086 39 5.3 0.0 21 45 159 183 152 187 0.86

6 16 0.12 53 4.9 0.4 21 44 187 210 185 214 0.73

7 16 0.001 0.47 11.5 0.5 21 52 215 246 211 248 0.90

8 16 0.00039 0.17 12.8 0.0 20 52 346 378 331 381 0.85

9 16 6.3 2.8e+03 -0.6 0.1 25 48 431 454 428 456 0.84

10 16 7.1 3.2e+03 -0.8 0.1 22 43 454 479 445 481 0.64

11 16 0.043 19 6.3 0.2 18 43 478 503 475 508 0.84

12 16 3 1.3e+03 0.4 0.2 21 50 509 538 503 542 0.76

13 16 1.7 7.7e+02 1.2 0.2 21 45 565 589 554 597 0.78

14 16 1.1 5.1e+02 1.7 0.2 20 45 592 617 576 624 0.72

15 16 0.8 3.6e+02 2.2 0.0 21 52 621 652 610 654 0.85

16 16 0.092 42 5.2 0.0 21 44 677 700 673 710 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5	2.2e+03	-0.3	0.3	23	32	49	58	47	74	0.72
2	16	0.00036	0.16	12.9	0.1	21	52	75	106	64	108	0.87
3	16	0.91	4.1e+02	2.0	0.4	22	46	104	128	101	134	0.69
4	16	2.9	1.3e+03	0.4	0.0	21	46	131	156	127	158	0.86
5	16	0.086	39	5.3	0.0	21	45	159	183	152	187	0.86
6	16	0.12	53	4.9	0.4	21	44	187	210	185	214	0.73
7	16	0.001	0.47	11.5	0.5	21	52	215	246	211	248	0.90
8	16	0.00039	0.17	12.8	0.0	20	52	346	378	331	381	0.85
9	16	6.3	2.8e+03	-0.6	0.1	25	48	431	454	428	456	0.84
10	16	7.1	3.2e+03	-0.8	0.1	22	43	454	479	445	481	0.64
11	16	0.043	19	6.3	0.2	18	43	478	503	475	508	0.84
12	16	3	1.3e+03	0.4	0.2	21	50	509	538	503	542	0.76
13	16	1.7	7.7e+02	1.2	0.2	21	45	565	589	554	597	0.78
14	16	1.1	5.1e+02	1.7	0.2	20	45	592	617	576	624	0.72
15	16	0.8	3.6e+02	2.2	0.0	21	52	621	652	610	654	0.85
16	16	0.092	42	5.2	0.0	21	44	677	700	673	710	0.81

Sequence Information

Coding Sequence: ATGGAACCTCCTAGCTACTCTACAATTAAGATTGAAGATCCGGACATTAAACTGGAAGATTTGCATCATTCAATTGACATTAAAGAAGAAGCTTCAATTATCGACTGTCACTTGGATAGAGAACACAAAGTAGAAATCAACGGAAAACCGTTCACGTGTGCAATTTGTAATTATAAATGTTCTTTTAAAGGAAGTTTAAAAATTCATTTAAGAACACATACGGGGGAGAAACCGCACACATGTGAAATTTGTGGCTACAAATGTACCGAAAGGGGAAATTTAAAAAGGCATTTAAAAATACACACTACCGATAAACCGTTTACATGTAACATTTGTGGGTACTCGTGTAAACGTAGGGAATATCTAATAGTTCATTTAAGGATCCATACTGGGGAGAAACCGTTCCCATGTGAAATTTGTGGATTAAAATGTATAGACACGGGAAGTTTAAAAAAACATTTAAAAATTCATTCAGGTGAGAAGCCGTTTACATGTGGAATTTGTGACTTTAAAAGTGCACGTAAAGAAAACTTAAAAATTCATTTAATGATACATACAGGTGAGAAACCGTTTACTTGTGAAATTTGTGACTACGCATGCGCAAACCAAAATTATTTGAAAGTTCATTTGAGGAAACATACGTGCGAAAAACCGTTTACATGTGAAATTTGTAACTATAAATGTGCGGTTAAGGGAAATTTAAATCGGCACTTGAGGACTCACAGTAGCGCGAAACCGTTTGCGTGTGAATTTTGTGACTACACGTGCGCACGGAAAGAACATTTAAAAATTCATTTGAGAACTCATACTCGAAAGAGGCCATTTAATTGTGAAGAAATCTCCTCCGTAATTAAAACTGAAGAGGATATGGATTTCAAGTTGGAAGATTTGCATCACTCCATTGACATTAAGGAAGAACCTTCAGATTTGAATTGGGAATGCAAGCTTGAACCCAGCGAAAAGTCGTTTAAATGTGTACTTTGCGAATACAAAGCAGCACGGAAAGACCACTTACAAAGACATTTAAGATCTCACACCGGTGAGAAACCGTTTAAGTGTGAAATTTGTTACAGTAAATTTGTAGATGCAGTAAATTTGAAAGATCATTTAAAAATTCATACGGGAGAAAAACCGTTTGGATGTGCATTATGTGACTATAAATGTGTAACTAAGGGTGGTATAAAAAAGCATTTTGTAAAACATACTGGGGAGAAACGGTTCAAATGTGAAATTTGTAACAATAAATTTGCGCATCGGAGCAGCTTAAAAATTCATTTAAGAATACATACCATTACATGTGAAATTTGTAAATGTAAATGTGAAGATAAGGAAAGCTTAAAAGAACATATTCATGCTTCTCACAAATTAATTACGTGTGCAATTTGCGATTTTAAATTTGTAAATAAGTCGAGTTTAATACTGCATTTAAGAAGACATACCGGCGAGAAACCTTACACATGTGAAATTTGTGAGTATAAAACTGTGGATAAAAGGCAGTTAAGAATTCATTCAAGAACTCATACAGGCGAGAGACCGTATGCGTGTGATATGTGTGACTATAAATGTGCACATAAGGACAGCTTAAGGGTACACATAAGAATACATACAGGCGAAAAACCGTATGCATGCAAAAGTTGCAATTTTAAAAGTATCAATGTAGGGGGTTTAAATAGGCACTTAAGAACACATACGGGCGAGAAGCCGTTTGTATGCGAAATTTGTGGATTTGCATGTGCAGATCCGGGACGTTTAAGAAATCATGTTAGAACTCATACCGGCGAAAAACCGTACAAGTGTGACATTTGCGACTACAGCTGCGGGTACAGGGGGAATTTGAAAATGCACATAAGAACTCATACAGGCGAGAAACCGTTTCCATGTAAATTATGTGATTACAAAAGTTCAGATAGTGGAAAGTTAAAAAAACATTTAAGAATCCATACTGGCGAGAAACCGTTCGGGTGTGACATGTGTGACTATAAATGTTCACAAAAAGTAAGTTTGGAGCTTCATTTAAGAACCCATACCGGGGAGAAGCCGTTTACGTGTGAAATTTGTGGCTTCAAAAGCGCACGCAATGGAAATTTAAAGAAACATTTTTTAAGTGTTCATTCTGGCAATAAACCGTTTGAATGTGAATTTTGTGACTATAAATGTGCCCGAAAAGAAAATTTAAAAGTTCATTCAAGAACTCATACGGACAAAAAATAG
Protein Sequence: MEPPSYSTIKIEDPDIKLEDLHHSIDIKEEASIIDCHLDREHKVEINGKPFTCAICNYKCSFKGSLKIHLRTHTGEKPHTCEICGYKCTERGNLKRHLKIHTTDKPFTCNICGYSCKRREYLIVHLRIHTGEKPFPCEICGLKCIDTGSLKKHLKIHSGEKPFTCGICDFKSARKENLKIHLMIHTGEKPFTCEICDYACANQNYLKVHLRKHTCEKPFTCEICNYKCAVKGNLNRHLRTHSSAKPFACEFCDYTCARKEHLKIHLRTHTRKRPFNCEEISSVIKTEEDMDFKLEDLHHSIDIKEEPSDLNWECKLEPSEKSFKCVLCEYKAARKDHLQRHLRSHTGEKPFKCEICYSKFVDAVNLKDHLKIHTGEKPFGCALCDYKCVTKGGIKKHFVKHTGEKRFKCEICNNKFAHRSSLKIHLRIHTITCEICKCKCEDKESLKEHIHASHKLITCAICDFKFVNKSSLILHLRRHTGEKPYTCEICEYKTVDKRQLRIHSRTHTGERPYACDMCDYKCAHKDSLRVHIRIHTGEKPYACKSCNFKSINVGGLNRHLRTHTGEKPFVCEICGFACADPGRLRNHVRTHTGEKPYKCDICDYSCGYRGNLKMHIRTHTGEKPFPCKLCDYKSSDSGKLKKHLRIHTGEKPFGCDMCDYKCSQKVSLELHLRTHTGEKPFTCEICGFKSARNGNLKKHFLSVHSGNKPFECEFCDYKCARKENLKVHSRTHTDKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292010;
90% Identity: iTF_01292010;
80% Identity: iTF_01292010;