Rful016976.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996559.1:25461287-25469049[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.00037 0.011 17.0 3.4 1 23 51 73 51 73 0.99
2 23 0.00012 0.0034 18.6 3.9 1 23 79 101 79 101 0.98
3 23 7.6e-06 0.00022 22.3 1.9 1 23 107 129 107 129 0.98
4 23 0.00025 0.0072 17.6 0.6 1 23 135 157 135 157 0.98
5 23 0.00023 0.0066 17.7 0.3 1 23 163 185 163 185 0.98
6 23 5.5e-05 0.0016 19.6 1.7 1 23 191 213 191 213 0.99
7 23 2.4e-05 0.00068 20.8 2.3 1 23 219 241 219 241 0.99
8 23 0.00014 0.004 18.4 4.4 1 23 247 269 247 269 0.97
9 23 0.00061 0.018 16.3 2.3 1 23 323 345 323 345 0.99
10 23 0.00036 0.01 17.1 0.3 1 23 351 373 351 373 0.98
11 23 3.3 94 4.6 1.5 3 23 381 401 379 401 0.94
12 23 2e-05 0.00058 21.0 2.4 1 23 407 429 407 429 0.99
13 23 0.29 8.4 7.9 4.6 2 23 432 454 431 454 0.93
14 23 4.2e-05 0.0012 20.0 0.4 2 23 458 479 457 479 0.97
15 23 0.00047 0.014 16.7 1.1 1 23 485 507 485 507 0.99
16 23 0.00011 0.0031 18.7 2.3 1 23 513 535 513 535 0.98
17 23 0.015 0.42 12.0 0.5 1 23 541 563 541 563 0.98
18 23 0.00018 0.0051 18.0 0.2 1 23 569 591 569 591 0.98
19 23 1.7e-05 0.00051 21.2 2.2 1 23 597 619 597 619 0.99
20 23 0.00011 0.0032 18.7 0.9 1 23 625 647 625 647 0.98
21 23 0.00079 0.023 16.0 1.9 3 23 655 675 653 675 0.98
22 23 0.00038 0.011 17.0 0.6 1 23 681 704 681 704 0.95
23 23 0.00026 0.0075 17.5 3.4 1 23 710 732 710 732 0.98

Sequence Information

Coding Sequence
ATGGAACCTCCTAGCTACTCTACAATTAAGATTGAAGATCCGGACATTAAACTGGAAGATTTGCATCATTCAATTGACATTAAAGAAGAAGCTTCAATTATCGACTGTCACTTGGATAGAGAACACAAAGTAGAAATCAACGGAAAACCGTTCACGTGTGCAATTTGTAATTATAAATGTTCTTTTAAAGGAAGTTTAAAAATTCATTTAAGAACACATACGGGGGAGAAACCGCACACATGTGAAATTTGTGGCTACAAATGTACCGAAAGGGGAAATTTAAAAAGGCATTTAAAAATACACACTACCGATAAACCGTTTACATGTAACATTTGTGGGTACTCGTGTAAACGTAGGGAATATCTAATAGTTCATTTAAGGATCCATACTGGGGAGAAACCGTTCCCATGTGAAATTTGTGGATTAAAATGTATAGACACGGGAAGTTTAAAAAAACATTTAAAAATTCATTCAGGTGAGAAGCCGTTTACATGTGGAATTTGTGACTTTAAAAGTGCACGTAAAGAAAACTTAAAAATTCATTTAATGATACATACAGGTGAGAAACCGTTTACTTGTGAAATTTGTGACTACGCATGCGCAAACCAAAATTATTTGAAAGTTCATTTGAGGAAACATACGTGCGAAAAACCGTTTACATGTGAAATTTGTAACTATAAATGTGCGGTTAAGGGAAATTTAAATCGGCACTTGAGGACTCACAGTAGCGCGAAACCGTTTGCGTGTGAATTTTGTGACTACACGTGCGCACGGAAAGAACATTTAAAAATTCATTTGAGAACTCATACTCGAAAGAGGCCATTTAATTGTGAAGAAATCTCCTCCGTAATTAAAACTGAAGAGGATATGGATTTCAAGTTGGAAGATTTGCATCACTCCATTGACATTAAGGAAGAACCTTCAGATTTGAATTGGGAATGCAAGCTTGAACCCAGCGAAAAGTCGTTTAAATGTGTACTTTGCGAATACAAAGCAGCACGGAAAGACCACTTACAAAGACATTTAAGATCTCACACCGGTGAGAAACCGTTTAAGTGTGAAATTTGTTACAGTAAATTTGTAGATGCAGTAAATTTGAAAGATCATTTAAAAATTCATACGGGAGAAAAACCGTTTGGATGTGCATTATGTGACTATAAATGTGTAACTAAGGGTGGTATAAAAAAGCATTTTGTAAAACATACTGGGGAGAAACGGTTCAAATGTGAAATTTGTAACAATAAATTTGCGCATCGGAGCAGCTTAAAAATTCATTTAAGAATACATACCATTACATGTGAAATTTGTAAATGTAAATGTGAAGATAAGGAAAGCTTAAAAGAACATATTCATGCTTCTCACAAATTAATTACGTGTGCAATTTGCGATTTTAAATTTGTAAATAAGTCGAGTTTAATACTGCATTTAAGAAGACATACCGGCGAGAAACCTTACACATGTGAAATTTGTGAGTATAAAACTGTGGATAAAAGGCAGTTAAGAATTCATTCAAGAACTCATACAGGCGAGAGACCGTATGCGTGTGATATGTGTGACTATAAATGTGCACATAAGGACAGCTTAAGGGTACACATAAGAATACATACAGGCGAAAAACCGTATGCATGCAAAAGTTGCAATTTTAAAAGTATCAATGTAGGGGGTTTAAATAGGCACTTAAGAACACATACGGGCGAGAAGCCGTTTGTATGCGAAATTTGTGGATTTGCATGTGCAGATCCGGGACGTTTAAGAAATCATGTTAGAACTCATACCGGCGAAAAACCGTACAAGTGTGACATTTGCGACTACAGCTGCGGGTACAGGGGGAATTTGAAAATGCACATAAGAACTCATACAGGCGAGAAACCGTTTCCATGTAAATTATGTGATTACAAAAGTTCAGATAGTGGAAAGTTAAAAAAACATTTAAGAATCCATACTGGCGAGAAACCGTTCGGGTGTGACATGTGTGACTATAAATGTTCACAAAAAGTAAGTTTGGAGCTTCATTTAAGAACCCATACCGGGGAGAAGCCGTTTACGTGTGAAATTTGTGGCTTCAAAAGCGCACGCAATGGAAATTTAAAGAAACATTTTTTAAGTGTTCATTCTGGCAATAAACCGTTTGAATGTGAATTTTGTGACTATAAATGTGCCCGAAAAGAAAATTTAAAAGTTCATTCAAGAACTCATACGGACAAAAAATAG
Protein Sequence
MEPPSYSTIKIEDPDIKLEDLHHSIDIKEEASIIDCHLDREHKVEINGKPFTCAICNYKCSFKGSLKIHLRTHTGEKPHTCEICGYKCTERGNLKRHLKIHTTDKPFTCNICGYSCKRREYLIVHLRIHTGEKPFPCEICGLKCIDTGSLKKHLKIHSGEKPFTCGICDFKSARKENLKIHLMIHTGEKPFTCEICDYACANQNYLKVHLRKHTCEKPFTCEICNYKCAVKGNLNRHLRTHSSAKPFACEFCDYTCARKEHLKIHLRTHTRKRPFNCEEISSVIKTEEDMDFKLEDLHHSIDIKEEPSDLNWECKLEPSEKSFKCVLCEYKAARKDHLQRHLRSHTGEKPFKCEICYSKFVDAVNLKDHLKIHTGEKPFGCALCDYKCVTKGGIKKHFVKHTGEKRFKCEICNNKFAHRSSLKIHLRIHTITCEICKCKCEDKESLKEHIHASHKLITCAICDFKFVNKSSLILHLRRHTGEKPYTCEICEYKTVDKRQLRIHSRTHTGERPYACDMCDYKCAHKDSLRVHIRIHTGEKPYACKSCNFKSINVGGLNRHLRTHTGEKPFVCEICGFACADPGRLRNHVRTHTGEKPYKCDICDYSCGYRGNLKMHIRTHTGEKPFPCKLCDYKSSDSGKLKKHLRIHTGEKPFGCDMCDYKCSQKVSLELHLRTHTGEKPFTCEICGFKSARNGNLKKHFLSVHSGNKPFECEFCDYKCARKENLKVHSRTHTDKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01293182;
90% Identity
iTF_01293182;
80% Identity
iTF_01293182;