Rful008840.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:16263891-16265090[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.46 2.1e+02 3.0 0.0 21 46 91 116 87 122 0.81 2 11 0.022 10 7.2 0.2 22 52 120 150 116 151 0.77 3 11 0.012 5.5 8.0 0.1 23 52 149 178 145 180 0.88 4 11 0.23 1e+02 4.0 0.1 21 52 175 206 173 207 0.86 5 11 0.47 2.1e+02 3.0 0.1 21 46 203 228 199 234 0.72 6 11 0.012 5.5 8.0 0.1 21 45 231 255 227 259 0.81 7 11 0.0065 2.9 8.9 0.0 21 50 259 288 255 293 0.88 8 11 0.093 42 5.2 0.5 21 49 288 316 284 319 0.80 9 11 0.035 16 6.6 0.2 21 52 316 347 314 348 0.82 10 11 0.00032 0.15 13.1 0.0 23 52 346 375 341 377 0.89 11 11 1 4.7e+02 1.9 0.0 21 44 372 395 369 398 0.78
Sequence Information
- Coding Sequence
- ATGGAAAACATTAGTAATACTTTGGAAACTGCGTATAATTCAAGCAACAGAGTGGAAGTTAATACGGAGGAATTTGAAGACATCAAATTTAATTTAGAAGACTTACATCATTCAATAGACATTAAGGAGGAAGAGGTAAATGGAGAAGCGTTTATAAATGAGATATCTGCAAAAAATTCTTGTATTCGAGAGAAATCATTTAATTGTGAAGTTTGTGGTTATAAATGTGCATATAAATCAATTTTGGTTACACATATCAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGAAATTTGTGATTATAAAAGTGCCCATAAGCAAAGTTTAAAAAATCATTTAAAAATTCACACAGGAGAAAAATCGTTTGCTTGTGAGATATGTGAATACAAATGTATTCAAAAATCACAATTAAAACAACATTTAGAAATTCACACGGACGGGAAACCATTTAGTTGTGAGATTTGTAGTTATAAATTTGCACACAAAGCAAATTTATATAGACATTTAAAACTTCACACAGGCGAGAAACCATTTAGTTGTGAGATTTGCGATCATAAATGTGCAAGTAAAAATTATTTAAAAGAACATTTAAAAATCCACAGGGCGGAGAAACCATTTTCTTGTATGATTTGTGACTATAAAGCTGCACGTAGAGTACAATTGAAAGAACATTTACAAACTCACACAGGAGAGAAGCCGTTTGCTTGTGAGATTTGTGACTATACATGTTCACGTAGATCAAATTTAAAAAAACATTTGAAAGATCATACAGGAGAGAAACCGTTTGTATGTGAAATTTGTGACAATAAATTTAAACAAAAATCATATTTAAGAGACCATATTTTACAAAATCATACAGCGGAAAAACCGTTTGTTTGTGAGATTTGTGATTATAAATGTGCACGTAGATCACATCTAAAAGAACATTTAAAAATTCACACAGGGGAAAAGCCGTTTGCATGTAAAATTTGCGACTACAAATGTACACGTAGCTCGCATTTAAAGGAACATTTAAAAACCCACACGGGTGCGAGACCATTTACTTGTGAGATTTGTGACTCTAAATTTAGACAAAAATCATCTTTAAAAAACCATTTAAAAATTCACACAGGCGAAAAGCCCTTTGTTTGTAGGTTTTGTGACTACAAAACTATACAAAAATCAGCTTTAAAAAAACATTTATTAACTCACACATAG
- Protein Sequence
- MENISNTLETAYNSSNRVEVNTEEFEDIKFNLEDLHHSIDIKEEEVNGEAFINEISAKNSCIREKSFNCEVCGYKCAYKSILVTHIRTHTGEKPFACEICDYKSAHKQSLKNHLKIHTGEKSFACEICEYKCIQKSQLKQHLEIHTDGKPFSCEICSYKFAHKANLYRHLKLHTGEKPFSCEICDHKCASKNYLKEHLKIHRAEKPFSCMICDYKAARRVQLKEHLQTHTGEKPFACEICDYTCSRRSNLKKHLKDHTGEKPFVCEICDNKFKQKSYLRDHILQNHTAEKPFVCEICDYKCARRSHLKEHLKIHTGEKPFACKICDYKCTRSSHLKEHLKTHTGARPFTCEICDSKFRQKSSLKNHLKIHTGEKPFVCRFCDYKTIQKSALKKHLLTHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292159;
- 90% Identity
- iTF_01292159;
- 80% Identity
- iTF_01292159;