Rful008840.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:16263891-16265090[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.002 0.059 14.7 1.4 1 23 67 89 67 89 0.98 2 12 0.00045 0.013 16.8 1.5 1 23 95 117 95 117 0.97 3 12 0.0002 0.0059 17.8 1.3 1 23 123 145 123 145 0.97 4 12 4.4e-05 0.0013 19.9 2.8 1 23 151 173 151 173 0.98 5 12 0.0017 0.05 14.9 4.1 1 23 179 201 179 201 0.98 6 12 0.0012 0.036 15.4 0.4 1 23 207 229 207 229 0.98 7 12 6e-06 0.00017 22.7 3.1 1 23 235 257 235 257 0.96 8 12 2.1e-05 0.00062 20.9 0.9 1 23 263 286 263 286 0.95 9 12 3.6e-05 0.001 20.2 3.6 1 23 292 314 292 314 0.98 10 12 3.7e-05 0.0011 20.2 6.1 1 23 320 342 320 342 0.97 11 12 3.4e-06 9.7e-05 23.5 1.9 1 23 348 370 348 370 0.98 12 12 0.00018 0.0053 18.0 1.6 1 23 376 398 376 398 0.98
Sequence Information
- Coding Sequence
- ATGGAAAACATTAGTAATACTTTGGAAACTGCGTATAATTCAAGCAACAGAGTGGAAGTTAATACGGAGGAATTTGAAGACATCAAATTTAATTTAGAAGACTTACATCATTCAATAGACATTAAGGAGGAAGAGGTAAATGGAGAAGCGTTTATAAATGAGATATCTGCAAAAAATTCTTGTATTCGAGAGAAATCATTTAATTGTGAAGTTTGTGGTTATAAATGTGCATATAAATCAATTTTGGTTACACATATCAGAACTCACACAGGCGAGAAACCTTTTGCTTGTGAAATTTGTGATTATAAAAGTGCCCATAAGCAAAGTTTAAAAAATCATTTAAAAATTCACACAGGAGAAAAATCGTTTGCTTGTGAGATATGTGAATACAAATGTATTCAAAAATCACAATTAAAACAACATTTAGAAATTCACACGGACGGGAAACCATTTAGTTGTGAGATTTGTAGTTATAAATTTGCACACAAAGCAAATTTATATAGACATTTAAAACTTCACACAGGCGAGAAACCATTTAGTTGTGAGATTTGCGATCATAAATGTGCAAGTAAAAATTATTTAAAAGAACATTTAAAAATCCACAGGGCGGAGAAACCATTTTCTTGTATGATTTGTGACTATAAAGCTGCACGTAGAGTACAATTGAAAGAACATTTACAAACTCACACAGGAGAGAAGCCGTTTGCTTGTGAGATTTGTGACTATACATGTTCACGTAGATCAAATTTAAAAAAACATTTGAAAGATCATACAGGAGAGAAACCGTTTGTATGTGAAATTTGTGACAATAAATTTAAACAAAAATCATATTTAAGAGACCATATTTTACAAAATCATACAGCGGAAAAACCGTTTGTTTGTGAGATTTGTGATTATAAATGTGCACGTAGATCACATCTAAAAGAACATTTAAAAATTCACACAGGGGAAAAGCCGTTTGCATGTAAAATTTGCGACTACAAATGTACACGTAGCTCGCATTTAAAGGAACATTTAAAAACCCACACGGGTGCGAGACCATTTACTTGTGAGATTTGTGACTCTAAATTTAGACAAAAATCATCTTTAAAAAACCATTTAAAAATTCACACAGGCGAAAAGCCCTTTGTTTGTAGGTTTTGTGACTACAAAACTATACAAAAATCAGCTTTAAAAAAACATTTATTAACTCACACATAG
- Protein Sequence
- MENISNTLETAYNSSNRVEVNTEEFEDIKFNLEDLHHSIDIKEEEVNGEAFINEISAKNSCIREKSFNCEVCGYKCAYKSILVTHIRTHTGEKPFACEICDYKSAHKQSLKNHLKIHTGEKSFACEICEYKCIQKSQLKQHLEIHTDGKPFSCEICSYKFAHKANLYRHLKLHTGEKPFSCEICDHKCASKNYLKEHLKIHRAEKPFSCMICDYKAARRVQLKEHLQTHTGEKPFACEICDYTCSRRSNLKKHLKDHTGEKPFVCEICDNKFKQKSYLRDHILQNHTAEKPFVCEICDYKCARRSHLKEHLKIHTGEKPFACKICDYKCTRSSHLKEHLKTHTGARPFTCEICDSKFRQKSSLKNHLKIHTGEKPFVCRFCDYKTIQKSALKKHLLTHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01293172;
- 90% Identity
- iTF_01293172;
- 80% Identity
- iTF_01293172;