Rful017524.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996559.1:27027073-27031465[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.099 45 5.1 0.0 26 45 55 74 38 80 0.90 2 21 0.0074 3.3 8.7 0.1 21 43 162 184 154 188 0.89 3 21 0.045 20 6.2 0.1 21 46 230 255 222 262 0.85 4 21 1.8 8.3e+02 1.1 0.3 21 30 258 267 253 285 0.82 5 21 0.0057 2.6 9.1 0.1 19 46 285 313 276 321 0.84 6 21 4.8 2.1e+03 -0.3 0.1 23 49 318 344 312 349 0.85 7 21 9.5 4.3e+03 -1.2 0.2 19 31 343 355 328 371 0.80 8 21 0.12 56 4.8 0.0 20 51 376 407 365 410 0.83 9 21 9.4 4.2e+03 -1.2 0.0 22 37 406 422 400 432 0.71 10 21 0.032 15 6.7 0.1 22 52 434 464 429 465 0.81 11 21 0.12 52 4.9 0.0 22 52 462 492 457 494 0.87 12 21 0.056 25 5.9 0.0 20 49 516 544 506 548 0.85 13 21 0.042 19 6.3 0.0 21 45 573 597 569 606 0.87 14 21 9.2 4.2e+03 -1.2 0.0 21 47 601 627 598 633 0.80 15 21 1.2 5.4e+02 1.7 0.0 21 52 629 660 621 662 0.85 16 21 2.5 1.1e+03 0.6 0.1 21 44 657 680 653 684 0.81 17 21 0.046 21 6.2 0.6 21 46 685 710 681 716 0.87 18 21 0.28 1.3e+02 3.7 0.0 21 48 713 740 709 746 0.85 19 21 0.71 3.2e+02 2.4 0.0 21 52 741 772 737 774 0.81 20 21 3.6 1.6e+03 0.1 0.1 21 43 769 791 765 796 0.80 21 21 3.6 1.6e+03 0.1 0.3 22 46 798 822 793 826 0.74
Sequence Information
- Coding Sequence
- ATGGAAACTCCATGTCATTTAAATCCAAAGGTGGAAGTTAAAACAGAAGAAATAGAATTCAACTTGGAAGAATTGCATCATTCGATTGATATTAAAGAAGATACGTCAGAACGTCATCTGGTGAGAGAATTTGAATTAAAAACAAATGGGAAACCGATTTTTACATGTGCAATTTGTGGTTACAAATCTACACAAAAGGTAAATTTAAAAAGACATATAAGAACTCATACGGGCGAGAAAGCGTTTATGTGTGACCTTTGTGACTATAAATCTGCATGGCCGAGACCTTTAAAGAATCATATAAAAACGCATAGCAACGAGAAGCCCTTCGTATGTGAAATTTGCGATTTTAAGTGTGCAATGAAAAGCGGTTTAATTGTACATTTAAGAAGTCATAACTCCAAAAATGTATTTAGCTGTGACGCATGCGATTATAAATGTCCGACTAAGCTGAAGTTAAAAATGCACATTAGGACACATACCGGCGAGAAACCTTTTGCGTGTGAAATTTGTGACTACAAATCGACACAAAAGGTAAATTTACGAAGGCATAGAAAAACTCATACTGGAGAAATTTTTGATTATAATTTAAAAGCACTTACCGACGAAAAGCTGTTTATATGCGACGTTTGTGACTGTAAATGTCCGAATAAATTCGAATTGAAAGTTCACATACGAACACATACCGGCGAGAAACCTTTCACATGTGAAATTTGTGACCACAAATGTTCAACTAAAGCAAATTTAAAAATCCATCTACGAACTCATACTGGCGAGAAACCATATACGTGTCGAATTTGTGAAGAAAATTTTGCGTATTTATCCACGTTAAAAATCCATCATTTAAGAACTCATCAGAGCGAAAATCCATTATTTACATGTCAAATTTGTGACTTTAAATGCAACCAAAAGCGGGAGTTAAATATACACTTAAAATCACATATCGATAAAAAACCGTTGGTGTGTCAAGTTTGTGACAAAAAGCATAGAAATAGAACCCAACTGAACGTCCATATAAGAGTTCATCATACCGGTGAGAAACCTTTTGAATGTGATATTTGCGGTTCTAAGTACGCAAGTAAAGATGGGTTAAAATTTCACATAGGAACCCATAGAAAAGTCGATACTGATGAGAAACCGTTCAAATGTGAAATTTGCGAATATAAAACTGGAAACAGATACAACCTAAGATGGCATCTCCGAAGTCATACAGGCACAAAACCGTACAAGTGTGAAATTTGCGACTATGCCTCCGCACATAAATCTCATTTTAAATCCCATTTAAAAACTCACACTGGCGAAAAATCCTTTCTGTGCAAAATATGTAACTATGCATTTGCCCGAAAGTCGCATTTAAAGCGTCATTTAAAAATACATTCTGGCGATAAACCGTTCACTTGTGAAATTTGTGACCGTAAATTTATCCAAAAAGGTACTTTAACTCAACATTTAAAAATACACAGCGGGGAGAAACCGTTTAAATGCGAAATGTGTGACTTTCGATTTGTAACTAAAGGAAATTTAAATAGCCACATGAAAAGTCATTCTAGCGAGAAATCGTTTACATGTGAAATTTGCGACTGCAAGTTGAAAGCCAAGTCGACTTTAAAAGCGCATTTAAAAAATCATTTTGACGAAAAAGCGTTTAACTGTGAAATATGCGGCTTTAAATGTACAACGAAGATTTATTTAGATACGCATTTAAGAATTCATACAGGCGAGAAACCTTTTACATGTGGGATATGTGACTGTAAATTTAGGAGTAAAGCGCATTTAAAAACACATATAAAAGGTCATTCTGGGGAAAAACCGTTTTTATGTGAAGTTTGTGATAGTAAATTTACCACCGCTTCAAGTTTAAAAGTTCACGTAAGGATTCATACAGGCGAGAAGCCGTACAACTGTGAAATTTGCGATTGTAAATTTACAACCGGGTCGATCTTAAAAATGCATTTAAGAATTCATACGGGTGAAAAACCGTTCGTTTGTGAAATTTGCGACTATAAATGCACGCAAAGGGATTCTTTAAACCAGCATTTTAAAACACATACCGGTGAAAAGCCGCACACATGTGCAGTTTGTGGCCATAGATGTGCACAGAAGCAACAATTAAAAGCGCATTTAAGAACTCATACCGGGGAGAAACCGTTCGGGTGTAAAATTTGTGGACACAAATTTTCGCAGAAAGGTTCGTTAAATAAACATTTGCAAAGTCATAACGAGGAGAAACCGTTTATGTGTGAAATTTGTGACGGTGCGTTTTCTCGTAAGGATACATTGCATAATCACTTAAAAACTCATACTGGTGAAAAGCCGTTTGTTTGTGGTATTTGTGACAAAAAGTGTGCAAGAAGGGCACATTTAAGAAATCATCAAAAAACTCATACCGGGGAAAAAGCATTTGCTTGTGAAATCTGTGATTATAAATGTACAAGGAAGGAATATTTAAATAGGCATTTAAGAATTCATACCGACAAGAAATAG
- Protein Sequence
- METPCHLNPKVEVKTEEIEFNLEELHHSIDIKEDTSERHLVREFELKTNGKPIFTCAICGYKSTQKVNLKRHIRTHTGEKAFMCDLCDYKSAWPRPLKNHIKTHSNEKPFVCEICDFKCAMKSGLIVHLRSHNSKNVFSCDACDYKCPTKLKLKMHIRTHTGEKPFACEICDYKSTQKVNLRRHRKTHTGEIFDYNLKALTDEKLFICDVCDCKCPNKFELKVHIRTHTGEKPFTCEICDHKCSTKANLKIHLRTHTGEKPYTCRICEENFAYLSTLKIHHLRTHQSENPLFTCQICDFKCNQKRELNIHLKSHIDKKPLVCQVCDKKHRNRTQLNVHIRVHHTGEKPFECDICGSKYASKDGLKFHIGTHRKVDTDEKPFKCEICEYKTGNRYNLRWHLRSHTGTKPYKCEICDYASAHKSHFKSHLKTHTGEKSFLCKICNYAFARKSHLKRHLKIHSGDKPFTCEICDRKFIQKGTLTQHLKIHSGEKPFKCEMCDFRFVTKGNLNSHMKSHSSEKSFTCEICDCKLKAKSTLKAHLKNHFDEKAFNCEICGFKCTTKIYLDTHLRIHTGEKPFTCGICDCKFRSKAHLKTHIKGHSGEKPFLCEVCDSKFTTASSLKVHVRIHTGEKPYNCEICDCKFTTGSILKMHLRIHTGEKPFVCEICDYKCTQRDSLNQHFKTHTGEKPHTCAVCGHRCAQKQQLKAHLRTHTGEKPFGCKICGHKFSQKGSLNKHLQSHNEEKPFMCEICDGAFSRKDTLHNHLKTHTGEKPFVCGICDKKCARRAHLRNHQKTHTGEKAFACEICDYKCTRKEYLNRHLRIHTDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292000;
- 90% Identity
- iTF_01292000;
- 80% Identity
- iTF_01292000;