Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996559.1:27027073-27031465[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 2.1e-06 6.2e-05 24.1 1.1 1 23 54 76 54 76 0.99

2 27 0.35 10 7.7 0.2 1 23 82 104 82 104 0.97

3 27 0.00077 0.022 16.0 0.6 1 23 110 132 110 132 0.98

4 27 0.013 0.37 12.2 2.7 1 23 138 160 138 160 0.98

5 27 3.3e-05 0.00097 20.3 1.6 1 23 166 188 166 188 0.97

6 27 0.00073 0.021 16.1 3.5 1 23 206 228 206 228 0.98

7 27 2.8e-05 0.00081 20.6 4.7 1 23 234 256 234 256 0.99

8 27 0.0034 0.099 14.0 1.8 1 23 262 285 262 285 0.97

9 27 0.0017 0.05 14.9 3.8 1 23 292 314 292 314 0.98

10 27 0.0082 0.24 12.8 3.3 2 23 321 342 320 343 0.94

11 27 0.031 0.91 11.0 0.2 1 23 349 371 349 371 0.97

12 27 0.00012 0.0033 18.6 1.2 1 23 381 403 381 403 0.99

13 27 0.00025 0.0071 17.6 4.9 1 23 409 431 409 431 0.99

14 27 3.4e-06 9.9e-05 23.4 3.0 1 23 437 459 437 459 0.95

15 27 4.5e-06 0.00013 23.0 0.8 1 23 465 487 465 487 0.98

16 27 2.3e-06 6.6e-05 24.0 1.7 1 23 493 515 493 515 0.99

17 27 0.0043 0.12 13.7 2.4 1 23 521 543 521 543 0.98

18 27 0.0021 0.061 14.7 2.3 1 23 549 571 549 571 0.98

19 27 0.00011 0.0032 18.7 4.6 1 23 577 599 577 599 0.98

20 27 8.8e-05 0.0025 19.0 0.3 1 23 605 627 605 627 0.95

21 27 0.0083 0.24 12.8 1.6 1 23 633 655 633 655 0.98

22 27 0.00032 0.0094 17.2 3.6 1 23 661 683 661 683 0.98

23 27 0.001 0.029 15.7 5.3 1 23 689 711 689 711 0.98

24 27 3.3e-05 0.00094 20.3 2.7 3 23 719 739 717 739 0.98

25 27 4e-05 0.0011 20.1 1.5 1 23 745 767 745 767 0.98

26 27 3e-05 0.00087 20.5 4.2 1 23 773 795 773 795 0.98

27 27 2.4e-05 0.0007 20.7 2.6 1 23 801 823 801 823 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	2.1e-06	6.2e-05	24.1	1.1	1	23	54	76	54	76	0.99
2	27	0.35	10	7.7	0.2	1	23	82	104	82	104	0.97
3	27	0.00077	0.022	16.0	0.6	1	23	110	132	110	132	0.98
4	27	0.013	0.37	12.2	2.7	1	23	138	160	138	160	0.98
5	27	3.3e-05	0.00097	20.3	1.6	1	23	166	188	166	188	0.97
6	27	0.00073	0.021	16.1	3.5	1	23	206	228	206	228	0.98
7	27	2.8e-05	0.00081	20.6	4.7	1	23	234	256	234	256	0.99
8	27	0.0034	0.099	14.0	1.8	1	23	262	285	262	285	0.97
9	27	0.0017	0.05	14.9	3.8	1	23	292	314	292	314	0.98
10	27	0.0082	0.24	12.8	3.3	2	23	321	342	320	343	0.94
11	27	0.031	0.91	11.0	0.2	1	23	349	371	349	371	0.97
12	27	0.00012	0.0033	18.6	1.2	1	23	381	403	381	403	0.99
13	27	0.00025	0.0071	17.6	4.9	1	23	409	431	409	431	0.99
14	27	3.4e-06	9.9e-05	23.4	3.0	1	23	437	459	437	459	0.95
15	27	4.5e-06	0.00013	23.0	0.8	1	23	465	487	465	487	0.98
16	27	2.3e-06	6.6e-05	24.0	1.7	1	23	493	515	493	515	0.99
17	27	0.0043	0.12	13.7	2.4	1	23	521	543	521	543	0.98
18	27	0.0021	0.061	14.7	2.3	1	23	549	571	549	571	0.98
19	27	0.00011	0.0032	18.7	4.6	1	23	577	599	577	599	0.98
20	27	8.8e-05	0.0025	19.0	0.3	1	23	605	627	605	627	0.95
21	27	0.0083	0.24	12.8	1.6	1	23	633	655	633	655	0.98
22	27	0.00032	0.0094	17.2	3.6	1	23	661	683	661	683	0.98
23	27	0.001	0.029	15.7	5.3	1	23	689	711	689	711	0.98
24	27	3.3e-05	0.00094	20.3	2.7	3	23	719	739	717	739	0.98
25	27	4e-05	0.0011	20.1	1.5	1	23	745	767	745	767	0.98
26	27	3e-05	0.00087	20.5	4.2	1	23	773	795	773	795	0.98
27	27	2.4e-05	0.0007	20.7	2.6	1	23	801	823	801	823	0.97

Sequence Information

Coding Sequence: ATGGAAACTCCATGTCATTTAAATCCAAAGGTGGAAGTTAAAACAGAAGAAATAGAATTCAACTTGGAAGAATTGCATCATTCGATTGATATTAAAGAAGATACGTCAGAACGTCATCTGGTGAGAGAATTTGAATTAAAAACAAATGGGAAACCGATTTTTACATGTGCAATTTGTGGTTACAAATCTACACAAAAGGTAAATTTAAAAAGACATATAAGAACTCATACGGGCGAGAAAGCGTTTATGTGTGACCTTTGTGACTATAAATCTGCATGGCCGAGACCTTTAAAGAATCATATAAAAACGCATAGCAACGAGAAGCCCTTCGTATGTGAAATTTGCGATTTTAAGTGTGCAATGAAAAGCGGTTTAATTGTACATTTAAGAAGTCATAACTCCAAAAATGTATTTAGCTGTGACGCATGCGATTATAAATGTCCGACTAAGCTGAAGTTAAAAATGCACATTAGGACACATACCGGCGAGAAACCTTTTGCGTGTGAAATTTGTGACTACAAATCGACACAAAAGGTAAATTTACGAAGGCATAGAAAAACTCATACTGGAGAAATTTTTGATTATAATTTAAAAGCACTTACCGACGAAAAGCTGTTTATATGCGACGTTTGTGACTGTAAATGTCCGAATAAATTCGAATTGAAAGTTCACATACGAACACATACCGGCGAGAAACCTTTCACATGTGAAATTTGTGACCACAAATGTTCAACTAAAGCAAATTTAAAAATCCATCTACGAACTCATACTGGCGAGAAACCATATACGTGTCGAATTTGTGAAGAAAATTTTGCGTATTTATCCACGTTAAAAATCCATCATTTAAGAACTCATCAGAGCGAAAATCCATTATTTACATGTCAAATTTGTGACTTTAAATGCAACCAAAAGCGGGAGTTAAATATACACTTAAAATCACATATCGATAAAAAACCGTTGGTGTGTCAAGTTTGTGACAAAAAGCATAGAAATAGAACCCAACTGAACGTCCATATAAGAGTTCATCATACCGGTGAGAAACCTTTTGAATGTGATATTTGCGGTTCTAAGTACGCAAGTAAAGATGGGTTAAAATTTCACATAGGAACCCATAGAAAAGTCGATACTGATGAGAAACCGTTCAAATGTGAAATTTGCGAATATAAAACTGGAAACAGATACAACCTAAGATGGCATCTCCGAAGTCATACAGGCACAAAACCGTACAAGTGTGAAATTTGCGACTATGCCTCCGCACATAAATCTCATTTTAAATCCCATTTAAAAACTCACACTGGCGAAAAATCCTTTCTGTGCAAAATATGTAACTATGCATTTGCCCGAAAGTCGCATTTAAAGCGTCATTTAAAAATACATTCTGGCGATAAACCGTTCACTTGTGAAATTTGTGACCGTAAATTTATCCAAAAAGGTACTTTAACTCAACATTTAAAAATACACAGCGGGGAGAAACCGTTTAAATGCGAAATGTGTGACTTTCGATTTGTAACTAAAGGAAATTTAAATAGCCACATGAAAAGTCATTCTAGCGAGAAATCGTTTACATGTGAAATTTGCGACTGCAAGTTGAAAGCCAAGTCGACTTTAAAAGCGCATTTAAAAAATCATTTTGACGAAAAAGCGTTTAACTGTGAAATATGCGGCTTTAAATGTACAACGAAGATTTATTTAGATACGCATTTAAGAATTCATACAGGCGAGAAACCTTTTACATGTGGGATATGTGACTGTAAATTTAGGAGTAAAGCGCATTTAAAAACACATATAAAAGGTCATTCTGGGGAAAAACCGTTTTTATGTGAAGTTTGTGATAGTAAATTTACCACCGCTTCAAGTTTAAAAGTTCACGTAAGGATTCATACAGGCGAGAAGCCGTACAACTGTGAAATTTGCGATTGTAAATTTACAACCGGGTCGATCTTAAAAATGCATTTAAGAATTCATACGGGTGAAAAACCGTTCGTTTGTGAAATTTGCGACTATAAATGCACGCAAAGGGATTCTTTAAACCAGCATTTTAAAACACATACCGGTGAAAAGCCGCACACATGTGCAGTTTGTGGCCATAGATGTGCACAGAAGCAACAATTAAAAGCGCATTTAAGAACTCATACCGGGGAGAAACCGTTCGGGTGTAAAATTTGTGGACACAAATTTTCGCAGAAAGGTTCGTTAAATAAACATTTGCAAAGTCATAACGAGGAGAAACCGTTTATGTGTGAAATTTGTGACGGTGCGTTTTCTCGTAAGGATACATTGCATAATCACTTAAAAACTCATACTGGTGAAAAGCCGTTTGTTTGTGGTATTTGTGACAAAAAGTGTGCAAGAAGGGCACATTTAAGAAATCATCAAAAAACTCATACCGGGGAAAAAGCATTTGCTTGTGAAATCTGTGATTATAAATGTACAAGGAAGGAATATTTAAATAGGCATTTAAGAATTCATACCGACAAGAAATAG
Protein Sequence: METPCHLNPKVEVKTEEIEFNLEELHHSIDIKEDTSERHLVREFELKTNGKPIFTCAICGYKSTQKVNLKRHIRTHTGEKAFMCDLCDYKSAWPRPLKNHIKTHSNEKPFVCEICDFKCAMKSGLIVHLRSHNSKNVFSCDACDYKCPTKLKLKMHIRTHTGEKPFACEICDYKSTQKVNLRRHRKTHTGEIFDYNLKALTDEKLFICDVCDCKCPNKFELKVHIRTHTGEKPFTCEICDHKCSTKANLKIHLRTHTGEKPYTCRICEENFAYLSTLKIHHLRTHQSENPLFTCQICDFKCNQKRELNIHLKSHIDKKPLVCQVCDKKHRNRTQLNVHIRVHHTGEKPFECDICGSKYASKDGLKFHIGTHRKVDTDEKPFKCEICEYKTGNRYNLRWHLRSHTGTKPYKCEICDYASAHKSHFKSHLKTHTGEKSFLCKICNYAFARKSHLKRHLKIHSGDKPFTCEICDRKFIQKGTLTQHLKIHSGEKPFKCEMCDFRFVTKGNLNSHMKSHSSEKSFTCEICDCKLKAKSTLKAHLKNHFDEKAFNCEICGFKCTTKIYLDTHLRIHTGEKPFTCGICDCKFRSKAHLKTHIKGHSGEKPFLCEVCDSKFTTASSLKVHVRIHTGEKPYNCEICDCKFTTGSILKMHLRIHTGEKPFVCEICDYKCTQRDSLNQHFKTHTGEKPHTCAVCGHRCAQKQQLKAHLRTHTGEKPFGCKICGHKFSQKGSLNKHLQSHNEEKPFMCEICDGAFSRKDTLHNHLKTHTGEKPFVCGICDKKCARRAHLRNHQKTHTGEKAFACEICDYKCTRKEYLNRHLRIHTDKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293169;
90% Identity: iTF_01293169;
80% Identity: iTF_01293169;