Rful008154.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:3171864-3173099[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.64 2.9e+02 2.5 0.1 26 52 91 117 84 117 0.81 2 10 0.051 23 6.0 0.1 22 46 115 139 112 145 0.85 3 10 0.0038 1.7 9.7 0.8 21 46 142 167 138 173 0.75 4 10 0.13 57 4.8 0.1 22 45 171 194 166 203 0.87 5 10 0.016 7.1 7.7 0.0 21 45 226 250 218 253 0.89 6 10 0.022 9.9 7.2 0.1 21 47 254 280 250 286 0.84 7 10 1.4 6.5e+02 1.4 0.1 21 46 282 307 278 311 0.81 8 10 3.6e-05 0.016 16.1 0.1 22 52 327 357 315 358 0.88 9 10 0.45 2e+02 3.0 0.0 21 44 354 377 352 381 0.76 10 10 0.0049 2.2 9.3 0.0 21 46 382 407 378 410 0.91
Sequence Information
- Coding Sequence
- ATGAGCCATTCATTTAGCAACTGTGTAATTAAGACAGAAGAAGAAGAAGAAATTAAATTTAAGTTAGAAGATTTGCATCATTGTATTGAAATTAAAGAAGAGACTGAAGTGTTAGAATCTCCACCAGATATAGAATACAAATCTGAAATTATTTTCAGTTGTAAATATGATCAGAAAACCGATTTGGGGGTTTATACTGACGCGAAATCGATTTCTTGCGAAGTACGTAAAGAAGACGATTTAGAAGGTCATCCAAGCGGAAAAGCATTTATATGTAAAATTTGTAACTATAAGTTTTCACGTGCTGAACATTTAGACAGACATTTAAAAATTCATAACGGCGATAAACCGTTTACGTGCAATTATTGTGAATTTAAATGTTCGCAAAACGTAAGCTTAAAAAGGCATTTAAGAACTCATACAGGGGAAAAACCGTTTTCGTGTGAAATTTGTCAATATAAAACCATTTGTAGAGGAAATTTGCGCAGGCATTTAAGAACTCACACGGGCAAGAAGCCGTTTACATGCGATATTTGTGATTTTAAGTGTGCACTTAAACAAAACTTAAAGTATCACTTAAGAACTCATACGGGTGAAAATTTATTTGCATGTGATATTTGTGAATATAAATGCGTACGGAAGGAAATCTTAAAGAGTCACATAAGAACCCACACAGGGGAGAAACCATTTCAGTGTGATATTTGTAAACTTAAATTTACCCAAAAGGGAAACTTAAAGAGTCACTTAAGAACTCATTCTGGCGAAAAACCGTTTGCATGTCAAATTTGCCATTATAAATTTTCACAAAGGGAAAGTTTAAAGTCCCACTTAAGAACTCATACTGGAGAAAAACCATTTACCTGTGAATATTGTGAATTTAAATGTGCCCGTAAGGAAGGTTTAAAAAGTCATTTAAAAATTCATACAGCTGTAGGTGACAAATGTACACGCAAGGAAATTTTCAGACCTGAAACAATCGAGAAACCGTTCGCATGTGAAATTTGCGACTGTAAATTCACTCAAAAACGAAACTTAAAAAGTCATTTAAGACTGCATACGGGGGAGAAACCGTTTCAATGTGAAATTTGTAATTTTAAATTTGTGCGTAACGGAGATCTGCTCCGTCATTTAAGAACACATACCGGCGAAAAGCCTTTTACTTGTGAAGTTTGTAACCATAAATTTGGACAAAAGGGACAATTGAATCGACATTTAAAAATTCATTCAAAGAAGTAA
- Protein Sequence
- MSHSFSNCVIKTEEEEEIKFKLEDLHHCIEIKEETEVLESPPDIEYKSEIIFSCKYDQKTDLGVYTDAKSISCEVRKEDDLEGHPSGKAFICKICNYKFSRAEHLDRHLKIHNGDKPFTCNYCEFKCSQNVSLKRHLRTHTGEKPFSCEICQYKTICRGNLRRHLRTHTGKKPFTCDICDFKCALKQNLKYHLRTHTGENLFACDICEYKCVRKEILKSHIRTHTGEKPFQCDICKLKFTQKGNLKSHLRTHSGEKPFACQICHYKFSQRESLKSHLRTHTGEKPFTCEYCEFKCARKEGLKSHLKIHTAVGDKCTRKEIFRPETIEKPFACEICDCKFTQKRNLKSHLRLHTGEKPFQCEICNFKFVRNGDLLRHLRTHTGEKPFTCEVCNHKFGQKGQLNRHLKIHSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292180;
- 90% Identity
- iTF_01292180;
- 80% Identity
- iTF_01292180;