Rful008154.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:3171864-3173099[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.7e-06 0.00022 22.3 2.3 1 23 90 112 90 112 0.98 2 11 0.0001 0.0029 18.8 5.4 1 23 118 140 118 140 0.99 3 11 0.0077 0.22 12.9 3.5 1 23 146 168 146 168 0.98 4 11 0.00098 0.028 15.7 3.7 1 23 174 196 174 196 0.99 5 11 0.003 0.087 14.2 1.5 1 23 202 224 202 224 0.97 6 11 4e-07 1.2e-05 26.3 2.1 1 23 230 252 230 252 0.99 7 11 8.1e-06 0.00023 22.2 3.8 1 23 258 280 258 280 0.98 8 11 0.0009 0.026 15.8 2.8 1 23 286 308 286 308 0.98 9 11 1.3e-05 0.00039 21.6 3.5 1 23 330 352 330 352 0.97 10 11 9.1e-07 2.6e-05 25.2 0.9 1 23 358 380 358 380 0.99 11 11 2.3e-05 0.00066 20.8 2.3 1 23 386 408 386 408 0.98
Sequence Information
- Coding Sequence
- ATGAGCCATTCATTTAGCAACTGTGTAATTAAGACAGAAGAAGAAGAAGAAATTAAATTTAAGTTAGAAGATTTGCATCATTGTATTGAAATTAAAGAAGAGACTGAAGTGTTAGAATCTCCACCAGATATAGAATACAAATCTGAAATTATTTTCAGTTGTAAATATGATCAGAAAACCGATTTGGGGGTTTATACTGACGCGAAATCGATTTCTTGCGAAGTACGTAAAGAAGACGATTTAGAAGGTCATCCAAGCGGAAAAGCATTTATATGTAAAATTTGTAACTATAAGTTTTCACGTGCTGAACATTTAGACAGACATTTAAAAATTCATAACGGCGATAAACCGTTTACGTGCAATTATTGTGAATTTAAATGTTCGCAAAACGTAAGCTTAAAAAGGCATTTAAGAACTCATACAGGGGAAAAACCGTTTTCGTGTGAAATTTGTCAATATAAAACCATTTGTAGAGGAAATTTGCGCAGGCATTTAAGAACTCACACGGGCAAGAAGCCGTTTACATGCGATATTTGTGATTTTAAGTGTGCACTTAAACAAAACTTAAAGTATCACTTAAGAACTCATACGGGTGAAAATTTATTTGCATGTGATATTTGTGAATATAAATGCGTACGGAAGGAAATCTTAAAGAGTCACATAAGAACCCACACAGGGGAGAAACCATTTCAGTGTGATATTTGTAAACTTAAATTTACCCAAAAGGGAAACTTAAAGAGTCACTTAAGAACTCATTCTGGCGAAAAACCGTTTGCATGTCAAATTTGCCATTATAAATTTTCACAAAGGGAAAGTTTAAAGTCCCACTTAAGAACTCATACTGGAGAAAAACCATTTACCTGTGAATATTGTGAATTTAAATGTGCCCGTAAGGAAGGTTTAAAAAGTCATTTAAAAATTCATACAGCTGTAGGTGACAAATGTACACGCAAGGAAATTTTCAGACCTGAAACAATCGAGAAACCGTTCGCATGTGAAATTTGCGACTGTAAATTCACTCAAAAACGAAACTTAAAAAGTCATTTAAGACTGCATACGGGGGAGAAACCGTTTCAATGTGAAATTTGTAATTTTAAATTTGTGCGTAACGGAGATCTGCTCCGTCATTTAAGAACACATACCGGCGAAAAGCCTTTTACTTGTGAAGTTTGTAACCATAAATTTGGACAAAAGGGACAATTGAATCGACATTTAAAAATTCATTCAAAGAAGTAA
- Protein Sequence
- MSHSFSNCVIKTEEEEEIKFKLEDLHHCIEIKEETEVLESPPDIEYKSEIIFSCKYDQKTDLGVYTDAKSISCEVRKEDDLEGHPSGKAFICKICNYKFSRAEHLDRHLKIHNGDKPFTCNYCEFKCSQNVSLKRHLRTHTGEKPFSCEICQYKTICRGNLRRHLRTHTGKKPFTCDICDFKCALKQNLKYHLRTHTGENLFACDICEYKCVRKEILKSHIRTHTGEKPFQCDICKLKFTQKGNLKSHLRTHSGEKPFACQICHYKFSQRESLKSHLRTHTGEKPFTCEYCEFKCARKEGLKSHLKIHTAVGDKCTRKEIFRPETIEKPFACEICDCKFTQKRNLKSHLRLHTGEKPFQCEICNFKFVRNGDLLRHLRTHTGEKPFTCEVCNHKFGQKGQLNRHLKIHSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01293159;
- 90% Identity
- iTF_01293159;
- 80% Identity
- iTF_01293159;