Rful011290.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:20373473-20375026[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0093 4.2 8.4 0.3 19 44 121 146 115 150 0.85 2 10 0.0052 2.3 9.2 0.0 21 46 151 176 147 183 0.88 3 10 4 1.8e+03 -0.0 0.1 23 44 181 203 178 207 0.70 4 10 0.085 38 5.3 0.1 21 45 208 232 200 235 0.84 5 10 0.068 31 5.7 0.1 20 45 235 260 232 264 0.83 6 10 0.0095 4.3 8.4 0.0 21 52 264 296 260 298 0.85 7 10 2.6 1.2e+03 0.6 0.0 22 44 350 372 345 377 0.80 8 10 0.0095 4.3 8.4 0.1 21 51 377 406 370 409 0.88 9 10 0.00093 0.42 11.6 0.0 21 44 433 456 425 463 0.88 10 10 0.078 35 5.5 0.1 7 45 475 513 468 516 0.79
Sequence Information
- Coding Sequence
- ATGGCTCAAGTTTTTTTGGAAGAGCAGCAACTTTTAGAAGAAACTGCCGACGTTTCGTCAGTGCAGTGTAATTTGATGAGGGATTCAGAAATTAAAAAAGAAAAATCGGATGATCTACAATTCAGCTACGATTTAGAAACAGTTTTTTTTAAATCTGAACAGAATGAAGAAGACGAATTACAACAATTTGACATTGTTAAGTTAGAAGAATCGTTTAGCTCCGAAATTTGCGACTATGGAAGAAATTTGGAAGATAATTCAGGTAAAACTCGCATTATTGAAAGACAATTTTCCTGTGAAGTTTGTAACTATAAATCATTGACCAAGCGCACTTTGAAACAGCATATTATAAAAACTCATACCAAAAGTAAAACAACTTTTACTTGTAATATTTGTGATTATAAATCAATTCGAAGAAGTAATTTGGAACGACACATAAGAACTCATTCAGGTGAAAAACCGTTCACTTGTGCAGTTTGCAACCATAAATTTGTAGACAAAGTTAATTTGGTACGGCATTTGAAAATACACGTAGGCAAACAATCATTCACTTGTGGAATTTGCAACTATAAATTAACAGGTAAAATCACTAAATTTGAGCGACATATGAGAATCCATACTGGCGAAAAACCGTTTACTTGCGAAATGTGTGACCATAAATCTATAGACGAATCCAGTTTACGACGGCATATGAAGACTCATTCGAGCGAAAAACCGTATGCGTGTGCAATGTGTGATTATAAATCGTTGCGCAAACCTAATTTAGAACGGCATATTAAAACACATACCGGTGAAAAGCCTTTCAGTTGTGACATTTGTGACTATAAAGCTTTGGACACAACAAATTTGAAACGTCATGTTATGCGAACTCATGTAGGCGCAAAACCATTCTCTTGTGAAATTTGCGACTACAGCACAACAGGCAAAAGTATTATAGAACGTCACATGAGAACTCATACAGGTGAAAAACCATTTGGGTGCGAAAAGTGCGACTATAAATGCTCGAGCAGAGAATCGTTAAAATACCATATGAAAAATCACGCCGGGGATAAACCGCATAAGTGTGACTTTTGTGAATATAAATCACTACGCAAGACTAACCTAGATCGGCATATTCGAACCCACACAGGTGAAAAACCGTACACGTGCAAAACTTGTGATCATAAATTTTTAGACAAAACTAATTTGGAACGGCATTTAAAAACCCATCTGGCTAAAACATCATTTAAGTGTGGGATTTGCGACTATGAGTCAACGGGAAAAATCAGATTTGAACGGCATGTAGGAATCCATTCCGGCGAAAAACCTTTCACTTGTGGAATTTGTGGCTACGAATCAACAGACAAAACCAATTTACGTCGGCATCTGTTAACTCATACAAACGAAAAATCGTTTAAGTGTAAAAAATGCGATTATAAATCAGCGCACAAACCGAATTTGGAACGGCATATGAGAACCCATACCGGAGCCAAACCATTCAATTGCGATATTTGTGACTATAAATCTTTAAACGGAAGCAATTTGAAACGGCATATCAAAACGCATGCAGCTTAA
- Protein Sequence
- MAQVFLEEQQLLEETADVSSVQCNLMRDSEIKKEKSDDLQFSYDLETVFFKSEQNEEDELQQFDIVKLEESFSSEICDYGRNLEDNSGKTRIIERQFSCEVCNYKSLTKRTLKQHIIKTHTKSKTTFTCNICDYKSIRRSNLERHIRTHSGEKPFTCAVCNHKFVDKVNLVRHLKIHVGKQSFTCGICNYKLTGKITKFERHMRIHTGEKPFTCEMCDHKSIDESSLRRHMKTHSSEKPYACAMCDYKSLRKPNLERHIKTHTGEKPFSCDICDYKALDTTNLKRHVMRTHVGAKPFSCEICDYSTTGKSIIERHMRTHTGEKPFGCEKCDYKCSSRESLKYHMKNHAGDKPHKCDFCEYKSLRKTNLDRHIRTHTGEKPYTCKTCDHKFLDKTNLERHLKTHLAKTSFKCGICDYESTGKIRFERHVGIHSGEKPFTCGICGYESTDKTNLRRHLLTHTNEKSFKCKKCDYKSAHKPNLERHMRTHTGAKPFNCDICDYKSLNGSNLKRHIKTHAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292220;
- 90% Identity
- iTF_01292220;
- 80% Identity
- iTF_01292220;