Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:20373473-20375026[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.15 4.2 8.8 1.6 1 23 97 120 97 120 0.95

2 15 7.1e-07 2e-05 25.6 1.3 1 23 127 149 127 149 0.99

3 15 3.7e-05 0.0011 20.2 1.2 1 23 155 177 155 177 0.98

4 15 7.9 2.3e+02 3.4 3.5 1 23 183 206 183 206 0.78

5 15 6e-05 0.0017 19.5 2.5 1 23 212 234 212 234 0.99

6 15 0.0048 0.14 13.5 0.4 1 23 240 262 240 262 0.96

7 15 0.08 2.3 9.7 0.6 1 23 268 291 268 291 0.94

8 15 0.0016 0.047 15.0 0.4 1 23 297 319 297 319 0.98

9 15 0.0025 0.072 14.4 3.8 3 23 327 347 325 347 0.98

10 15 0.071 2 9.8 4.2 1 23 353 375 353 375 0.96

11 15 0.00051 0.015 16.6 4.7 1 23 381 403 381 403 0.99

12 15 0.26 7.5 8.1 0.2 1 23 409 431 409 431 0.95

13 15 7.3e-06 0.00021 22.4 0.6 1 23 437 459 437 459 0.98

14 15 1.1e-05 0.00031 21.8 4.1 1 23 465 487 465 487 0.99

15 15 0.0026 0.076 14.3 0.9 1 23 493 515 493 515 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.15	4.2	8.8	1.6	1	23	97	120	97	120	0.95
2	15	7.1e-07	2e-05	25.6	1.3	1	23	127	149	127	149	0.99
3	15	3.7e-05	0.0011	20.2	1.2	1	23	155	177	155	177	0.98
4	15	7.9	2.3e+02	3.4	3.5	1	23	183	206	183	206	0.78
5	15	6e-05	0.0017	19.5	2.5	1	23	212	234	212	234	0.99
6	15	0.0048	0.14	13.5	0.4	1	23	240	262	240	262	0.96
7	15	0.08	2.3	9.7	0.6	1	23	268	291	268	291	0.94
8	15	0.0016	0.047	15.0	0.4	1	23	297	319	297	319	0.98
9	15	0.0025	0.072	14.4	3.8	3	23	327	347	325	347	0.98
10	15	0.071	2	9.8	4.2	1	23	353	375	353	375	0.96
11	15	0.00051	0.015	16.6	4.7	1	23	381	403	381	403	0.99
12	15	0.26	7.5	8.1	0.2	1	23	409	431	409	431	0.95
13	15	7.3e-06	0.00021	22.4	0.6	1	23	437	459	437	459	0.98
14	15	1.1e-05	0.00031	21.8	4.1	1	23	465	487	465	487	0.99
15	15	0.0026	0.076	14.3	0.9	1	23	493	515	493	515	0.96

Sequence Information

Coding Sequence: ATGGCTCAAGTTTTTTTGGAAGAGCAGCAACTTTTAGAAGAAACTGCCGACGTTTCGTCAGTGCAGTGTAATTTGATGAGGGATTCAGAAATTAAAAAAGAAAAATCGGATGATCTACAATTCAGCTACGATTTAGAAACAGTTTTTTTTAAATCTGAACAGAATGAAGAAGACGAATTACAACAATTTGACATTGTTAAGTTAGAAGAATCGTTTAGCTCCGAAATTTGCGACTATGGAAGAAATTTGGAAGATAATTCAGGTAAAACTCGCATTATTGAAAGACAATTTTCCTGTGAAGTTTGTAACTATAAATCATTGACCAAGCGCACTTTGAAACAGCATATTATAAAAACTCATACCAAAAGTAAAACAACTTTTACTTGTAATATTTGTGATTATAAATCAATTCGAAGAAGTAATTTGGAACGACACATAAGAACTCATTCAGGTGAAAAACCGTTCACTTGTGCAGTTTGCAACCATAAATTTGTAGACAAAGTTAATTTGGTACGGCATTTGAAAATACACGTAGGCAAACAATCATTCACTTGTGGAATTTGCAACTATAAATTAACAGGTAAAATCACTAAATTTGAGCGACATATGAGAATCCATACTGGCGAAAAACCGTTTACTTGCGAAATGTGTGACCATAAATCTATAGACGAATCCAGTTTACGACGGCATATGAAGACTCATTCGAGCGAAAAACCGTATGCGTGTGCAATGTGTGATTATAAATCGTTGCGCAAACCTAATTTAGAACGGCATATTAAAACACATACCGGTGAAAAGCCTTTCAGTTGTGACATTTGTGACTATAAAGCTTTGGACACAACAAATTTGAAACGTCATGTTATGCGAACTCATGTAGGCGCAAAACCATTCTCTTGTGAAATTTGCGACTACAGCACAACAGGCAAAAGTATTATAGAACGTCACATGAGAACTCATACAGGTGAAAAACCATTTGGGTGCGAAAAGTGCGACTATAAATGCTCGAGCAGAGAATCGTTAAAATACCATATGAAAAATCACGCCGGGGATAAACCGCATAAGTGTGACTTTTGTGAATATAAATCACTACGCAAGACTAACCTAGATCGGCATATTCGAACCCACACAGGTGAAAAACCGTACACGTGCAAAACTTGTGATCATAAATTTTTAGACAAAACTAATTTGGAACGGCATTTAAAAACCCATCTGGCTAAAACATCATTTAAGTGTGGGATTTGCGACTATGAGTCAACGGGAAAAATCAGATTTGAACGGCATGTAGGAATCCATTCCGGCGAAAAACCTTTCACTTGTGGAATTTGTGGCTACGAATCAACAGACAAAACCAATTTACGTCGGCATCTGTTAACTCATACAAACGAAAAATCGTTTAAGTGTAAAAAATGCGATTATAAATCAGCGCACAAACCGAATTTGGAACGGCATATGAGAACCCATACCGGAGCCAAACCATTCAATTGCGATATTTGTGACTATAAATCTTTAAACGGAAGCAATTTGAAACGGCATATCAAAACGCATGCAGCTTAA
Protein Sequence: MAQVFLEEQQLLEETADVSSVQCNLMRDSEIKKEKSDDLQFSYDLETVFFKSEQNEEDELQQFDIVKLEESFSSEICDYGRNLEDNSGKTRIIERQFSCEVCNYKSLTKRTLKQHIIKTHTKSKTTFTCNICDYKSIRRSNLERHIRTHSGEKPFTCAVCNHKFVDKVNLVRHLKIHVGKQSFTCGICNYKLTGKITKFERHMRIHTGEKPFTCEMCDHKSIDESSLRRHMKTHSSEKPYACAMCDYKSLRKPNLERHIKTHTGEKPFSCDICDYKALDTTNLKRHVMRTHVGAKPFSCEICDYSTTGKSIIERHMRTHTGEKPFGCEKCDYKCSSRESLKYHMKNHAGDKPHKCDFCEYKSLRKTNLDRHIRTHTGEKPYTCKTCDHKFLDKTNLERHLKTHLAKTSFKCGICDYESTGKIRFERHVGIHSGEKPFTCGICGYESTDKTNLRRHLLTHTNEKSFKCKKCDYKSAHKPNLERHMRTHTGAKPFNCDICDYKSLNGSNLKRHIKTHAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01293158;
90% Identity: iTF_01293158;
80% Identity: iTF_01293158;