Basic Information

Insect: Reticulitermes lucifugus
Gene Symbol: -
Assembly: GCA_026260175.1
Location: JAKCWW010002542.1:12680-28525[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0087 0.86 10.9 1.4 1 23 295 317 295 317 0.97

2 14 0.16 16 6.9 0.1 2 23 324 348 323 348 0.89

3 14 0.0023 0.23 12.7 0.3 1 23 354 377 354 377 0.98

4 14 0.00011 0.011 16.8 4.2 1 23 383 405 383 405 0.96

5 14 1.5e-05 0.0015 19.6 4.6 2 23 412 433 411 433 0.96

6 14 2.6e-05 0.0026 18.8 1.9 1 23 439 461 439 461 0.97

7 14 0.041 4.1 8.7 3.2 3 23 469 490 468 490 0.96

8 14 0.00015 0.015 16.5 0.7 1 23 516 538 516 538 0.98

9 14 4.7e-07 4.7e-05 24.3 0.5 1 23 821 843 821 843 0.97

10 14 0.00038 0.038 15.2 4.4 1 23 850 872 850 872 0.98

11 14 0.0058 0.58 11.4 0.1 1 23 880 903 880 903 0.98

12 14 4.3e-06 0.00043 21.3 1.7 1 23 909 931 909 931 0.96

13 14 4.6e-05 0.0046 18.0 2.7 1 23 937 959 937 959 0.98

14 14 1.1e-06 0.00011 23.1 3.4 1 23 965 987 965 987 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0087	0.86	10.9	1.4	1	23	295	317	295	317	0.97
2	14	0.16	16	6.9	0.1	2	23	324	348	323	348	0.89
3	14	0.0023	0.23	12.7	0.3	1	23	354	377	354	377	0.98
4	14	0.00011	0.011	16.8	4.2	1	23	383	405	383	405	0.96
5	14	1.5e-05	0.0015	19.6	4.6	2	23	412	433	411	433	0.96
6	14	2.6e-05	0.0026	18.8	1.9	1	23	439	461	439	461	0.97
7	14	0.041	4.1	8.7	3.2	3	23	469	490	468	490	0.96
8	14	0.00015	0.015	16.5	0.7	1	23	516	538	516	538	0.98
9	14	4.7e-07	4.7e-05	24.3	0.5	1	23	821	843	821	843	0.97
10	14	0.00038	0.038	15.2	4.4	1	23	850	872	850	872	0.98
11	14	0.0058	0.58	11.4	0.1	1	23	880	903	880	903	0.98
12	14	4.3e-06	0.00043	21.3	1.7	1	23	909	931	909	931	0.96
13	14	4.6e-05	0.0046	18.0	2.7	1	23	937	959	937	959	0.98
14	14	1.1e-06	0.00011	23.1	3.4	1	23	965	987	965	987	0.98

Sequence Information

Coding Sequence: ATGGAGGATGTGGATAGGGGCTTATCCCTAGCATCACTGGATTCTGAAGATGGAAGAGACATAAAAGAAATTGCTTCTGCAAGTTCTGCAGCCACTACAACCACCACAGGAAGAGGCATAGATGGGTCCATGGTTATTTATGTGCAGCAGAAGCAGCAAGAACTACCTGTTTCATTAACAAGTGCAGGAAGCAGTAATTCTACAGAACAGCAGCTTGATACACTAATGCCACAAAATTTAACTGACAGAGTGAATGACAATGTCACAAGTCCAGAGCAGCCCCAGCCACTTCCTGAAGAAGATATGGTAGTGAGTTTGTTAGGTTCTGTGGTGACAAACTCTACTGGTGATGACACTTTACTTTCACAACAGCAGGCTGGAGTTGTTCATGCTGAAGATGGACAAATTCTGTGTGTCACATACATAGTAAATCCTACCTTAGATGAAGTCACTGACACTCAGCAACCACCTGCAAGTGAAATTTCCCAGCGTATGGTTCTGCATGTAGCTGATGATGGGACTACTCTTGTGTTGCCAGCTGAGAATGTGGAAGTGGGAGGATTTGACATTGAGAGTGGGCTTGTACCTCATTTGACTGTTAATGGCATGTACACACTTGCAACAAATGACAATTTATCTGAAGAATCATTAACTTCTCCTTTAGTTCTAACTTCTGACCTGAAAAATATAAGTAAAGAGGAAGCAAGGCTGAAAAATCGCCCATTTATTGAGATTAATGATCGCAGACGTACTGAACAGGTAATTGGCAGTGAGCTGCATATAGAAGAAAAGCTGGAGGTGCTGGATGCAATGCTAACTCCTGCACCAGAGCGCCCTCGTAAGAAGAAATCGGATTCTGTCACAGAGGATGGAGAAGGGAGTTACATGTGTGACCTGTGTGAGACCACGTTTCCACGCGCCAACCAGTTCTATGGTCATTTGCACTCTCACAGTGGTGAGAGGAAGTGGGAATGTGCAATATGCCCTCACAAGGTAGTGTTTCCAAGTCAGGCATTACTGCGTCGTCACGAGAGGGAATCTCATCTGAATTTACGACCATATACTTGTGCGGTATGTGCTGCACGTTTTGATCGTGTCTCCCAGCTTAGTTACCATCAGCGTCGCATTCATGCTGGAGAACGTGGCCATGCTTGTCAGATCTGCCATAAGGCTTTCTTCAAGCGATCTGACCTAAAGACACACTTGAATATTCACTTGGGAATCAACAAATGTATCTGTGAGACCTGTGGGAAGAAATTTAATCATGTGTCCAATTTGATTCGACATACAAGGATGCACTCAGGAATAAAGCCATATCCTTGCACAGTATGTGGTCGACGGTTCACCCAACTCAGTGCCCTTCATCAGCATAAAACATCACATCAGACAAATAAGGATGTTGCTTGCAGCATCTGTCGCAAAATGTTCAAATCACACATGGTGATGCGCAAACATGTGCGCCAGTTTCACAAGGACAAACTGGCTGCATCAGGCAAGGATATCAATTCTGTCCTGAAGATAAAGGATGGTGCACAGAGTAGAAGATTCTACTGCAAAGTGTGTGGGGAGAACTTTGAGTTTTCTGCACTGCTTAGACAGCATGAGAGGCAGCATGAGAAAGAGACCAGCTTCCACTGTAGTTGTTGTGGGCAGGACTATGACACAGTGGAGTTGCTGAAGAGCCACTCCTGTCTAACTCCTGAGGAGAGGTTACAAAAACAAGCGGAAGACGAAGCAGAGGCAGAGAGAGTTTCACTGAACTCCCAGTTGGAGTCTCTGCTGCAGGAGCACAGTGGAGCTGAAGAAAGGAATGATGCAAATGGAAACAGTGGGATTATGAGCGAAATTGTAATCTATGTGACGCAAGAGGGGCAGGATGAACCCACCCAGGTTCACATCCAGCCCATGCCTGGTCCAATCTTAGGCCACATAGATGAACAAAAACCTTTAATACTAGTACCTAGCACAGACTTAGGACTCCAGAAGAATGGGGCTGACAGCCAGCATAAACAAAGCCATAAAGATATAGTAACACTGGGGGATAGTGGAGGTACCTGTAAGATGGAAACGGACCTTGATGCTGCACCCCTACAGTTGGAATTTTGCAGCTCTGGGATGACTGTTGGCAACGGTGATAAGAACAACAGGAGTGACAGGGCAGATTGCACTAACTCATCTCCTTTGTTTCCCCACAACATGGTAACAATCCTGGGAGGTGACAGCAGCAGCGATAACTTTGCTACAGGTGGTGATGTTCTGGGAGAACCTAGTCACGACTCTGACTGTGATAATGGCATGCAGAATGTAACAGGAATGATAACTGTTCCAAATAAAGGAGTGATAAAGACTGAAGAGTATGTGGACTTACTGATTCCAAAAATTGAAGCTAGTGGCATATCATCAGAGTCTGTTCCTGTTCAGAGTAAAACAGTGTCTGCTGTGAAGAAACAAGTGCGAGTGTACCAATGTCCTGAGTGTCCAAAAACATTTGTTAAGAACAGCAACTTCAAACAACACTTAGGTATTCACTTTATTGACCAGCAGCATTACCACTGTCCAACTTGTGGCCAATTTTTTGCTTGGAAGTCAACACTGAACAAACACATGCACACTCACAGTGTAGGCCCTCTTCCTCGCTACAGGTGTGACCTGTGCAGCAAAGAATATGCTGCACCTACACAGGTTCAGGAACACATTAAACGGGACCATTACAAGCAAAGGCCACATGCTTGTGTTGTTTGTGGTAAAACATTTTATAAGAAATATGATCTCAAAATACATGTCAGAACACACACAAAAGAGCGTCCATATATTTGTGGGACATGTGGGAAGAGTTTCTACCACCTTTCTCACATAATACGTCATGAACGCATTCATTCTGGCCATCGACCATATCACTGCCCTGACTGCGGCCGTCAGTTCAACCAATCCAGTTCACTCAAGAACCATAGGCAACGTCACAACCAGTGCGTCACGAAGGCTGTTCCGCCTGCAACTGAGCTGGCACCTCTAGATCTGATACAACCTGAGTTTCCAGATATCGGGCCAGATTCAGTTCCTCTGTATACAGGAACCAATTTGTAA
Protein Sequence: MEDVDRGLSLASLDSEDGRDIKEIASASSAATTTTTGRGIDGSMVIYVQQKQQELPVSLTSAGSSNSTEQQLDTLMPQNLTDRVNDNVTSPEQPQPLPEEDMVVSLLGSVVTNSTGDDTLLSQQQAGVVHAEDGQILCVTYIVNPTLDEVTDTQQPPASEISQRMVLHVADDGTTLVLPAENVEVGGFDIESGLVPHLTVNGMYTLATNDNLSEESLTSPLVLTSDLKNISKEEARLKNRPFIEINDRRRTEQVIGSELHIEEKLEVLDAMLTPAPERPRKKKSDSVTEDGEGSYMCDLCETTFPRANQFYGHLHSHSGERKWECAICPHKVVFPSQALLRRHERESHLNLRPYTCAVCAARFDRVSQLSYHQRRIHAGERGHACQICHKAFFKRSDLKTHLNIHLGINKCICETCGKKFNHVSNLIRHTRMHSGIKPYPCTVCGRRFTQLSALHQHKTSHQTNKDVACSICRKMFKSHMVMRKHVRQFHKDKLAASGKDINSVLKIKDGAQSRRFYCKVCGENFEFSALLRQHERQHEKETSFHCSCCGQDYDTVELLKSHSCLTPEERLQKQAEDEAEAERVSLNSQLESLLQEHSGAEERNDANGNSGIMSEIVIYVTQEGQDEPTQVHIQPMPGPILGHIDEQKPLILVPSTDLGLQKNGADSQHKQSHKDIVTLGDSGGTCKMETDLDAAPLQLEFCSSGMTVGNGDKNNRSDRADCTNSSPLFPHNMVTILGGDSSSDNFATGGDVLGEPSHDSDCDNGMQNVTGMITVPNKGVIKTEEYVDLLIPKIEASGISSESVPVQSKTVSAVKKQVRVYQCPECPKTFVKNSNFKQHLGIHFIDQQHYHCPTCGQFFAWKSTLNKHMHTHSVGPLPRYRCDLCSKEYAAPTQVQEHIKRDHYKQRPHACVVCGKTFYKKYDLKIHVRTHTKERPYICGTCGKSFYHLSHIIRHERIHSGHRPYHCPDCGRQFNQSSSLKNHRQRHNQCVTKAVPPATELAPLDLIQPEFPDIGPDSVPLYTGTNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00370401; iTF_00396583;
90% Identity: iTF_00370401;
80% Identity: -