Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:1756910-1780332[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0085 0.24 11.4 1.1 1 23 294 316 294 316 0.97

2 14 0.059 1.7 8.8 0.0 2 23 323 347 322 347 0.90

3 14 0.0076 0.22 11.6 0.9 1 23 353 376 353 376 0.97

4 14 9.2e-05 0.0026 17.6 4.4 1 23 382 404 382 404 0.97

5 14 2.2e-05 0.00063 19.6 4.6 2 23 411 432 410 432 0.96

6 14 0.00017 0.0048 16.8 1.8 1 23 438 460 438 460 0.97

7 14 0.041 1.2 9.3 2.6 3 23 468 489 467 489 0.96

8 14 0.0002 0.0058 16.5 0.7 1 23 515 537 515 537 0.98

9 14 7e-07 2e-05 24.3 0.5 1 23 823 845 823 845 0.97

10 14 0.00032 0.0092 15.9 1.5 1 23 852 874 852 874 0.98

11 14 0.0097 0.28 11.2 0.2 1 23 882 905 882 905 0.98

12 14 6.3e-06 0.00018 21.3 1.7 1 23 911 933 911 933 0.96

13 14 6.7e-05 0.0019 18.0 2.7 1 23 939 961 939 961 0.98

14 14 2.3e-06 6.6e-05 22.7 3.3 1 23 967 989 967 989 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0085	0.24	11.4	1.1	1	23	294	316	294	316	0.97
2	14	0.059	1.7	8.8	0.0	2	23	323	347	322	347	0.90
3	14	0.0076	0.22	11.6	0.9	1	23	353	376	353	376	0.97
4	14	9.2e-05	0.0026	17.6	4.4	1	23	382	404	382	404	0.97
5	14	2.2e-05	0.00063	19.6	4.6	2	23	411	432	410	432	0.96
6	14	0.00017	0.0048	16.8	1.8	1	23	438	460	438	460	0.97
7	14	0.041	1.2	9.3	2.6	3	23	468	489	467	489	0.96
8	14	0.0002	0.0058	16.5	0.7	1	23	515	537	515	537	0.98
9	14	7e-07	2e-05	24.3	0.5	1	23	823	845	823	845	0.97
10	14	0.00032	0.0092	15.9	1.5	1	23	852	874	852	874	0.98
11	14	0.0097	0.28	11.2	0.2	1	23	882	905	882	905	0.98
12	14	6.3e-06	0.00018	21.3	1.7	1	23	911	933	911	933	0.96
13	14	6.7e-05	0.0019	18.0	2.7	1	23	939	961	939	961	0.98
14	14	2.3e-06	6.6e-05	22.7	3.3	1	23	967	989	967	989	0.98

Sequence Information

Coding Sequence: ATGGATGATGTGGATAGGAACTTAGCCCTAGCATCATTGGGCTCAGAAGAAAGGAGAGAAAGATGTGAAATTGCTTCTGCAACCTCTACTGCCACTACCTGCACGACCACCACAGAAGGAGGCATAGATCGATCTATGGTTATATATGTGCAACAGGAGCAACAACAACTTCCTGATCCATTACTAACAACTGCAGGAAGTAATTATACAGAACAGCAGCTCATTACGCTAGTGCCACAAAATTTAACTGAGAGGGTAAACGAATCTCTCACGAGTTCAGCGCAGCCCCAGACACTTCCTGAAGAAGATATGGTAACAAGTTTGCTAGGGTCTGTGATGACAAACTGTACTGGTGATGACACATTACTTTCACAACAGCGGACAGGAGCTTTCCATACTGCAGATGGTCAAATTCTGTATGTCACATACACAGTAAATCCTACGTTAGATGAAGTCATTGCAACTCATCAACCATTTGCAAGTGAAATTTCTCAGCGAATGGTGCTACATGTAACAGATTATGGGAGTACACTTGTGTTACCAGCTGAGAATGTGGAAGTGGGTGGATTTGATGTTGAGAGTGGGCTTGTGCCTCAGTTGACTGGTGTATACTCGCTTGTAACAAATGACAGTTTATCTGAAGACCCAGCAGCTTGTCCTTTAGTCCAAACTTCTGATATGAAAATTacaaaagaggaagaaaagCTGAAACAACGCCCATTTGTTGAGATTAATAATCGCAGACGTACTGAACAGGTGATTGGTAATGAGCTGCACATAGAACAGAAGCTGGAGGTGTTGGATGCAATGCTAACCCCTGCACCAGAGCGGCCTCGTAAGAGGAAATCAGACCCCATCACGGAGGACAGAGAAAGGATTTATATATGTGACCTCTGTGAGACTGCATTTTCACGGGCAAACCAATTCTATGGCCATTTgcattctcacagtggtgagaGAAATTGGGAGTGCGCAATATGCCCTGGCAAGGTGGTGTTTCCAAGTCAGTCATTACTACGTCGTCATGAGAGGGAATCTCATTTGAATTTACGACCACATACTTGTGGGGTGTGTGCTGCACGTTTTGATCGGGTCTCACAGCTTAGTTATCATCAGCGCCGCATTCATGCTGGAGAGCGTGGCCATGTGTGTCAGATCTGCCATAAGGCTTTCTTCAAGCGATCTGATCTAAAGACACACCTGAATATTCACTTGGGAATCAACAAGTGTATCTGTGAGACTTGTGGAAAGAAATTTAATCATGTGTCTAATCTGATTCGACACACAAGGATGCACTCAGGAATAAAACCATATCCTTGCACAGTATGTGGGCGACGGTTCAGCCAACTCAATGCCCTCCATCAACACAAAACATCGCATCAGACGAATAAGGATGTTGCTTGCAGCATCTGTCGCAAGATGTTCAAATCTCACATGGTAATGCGTAAACATGTGCGTCAACTGCACAGGGACAAACTGGCTGCATCAGGCAAGGATGCCAATTCTGTTCTGAAGATAAAAGATGGTGCTCAGAGTAGAAGGTTCTATTGCAAAGTGTGTGGGGAGAATTTTGAGTTTTCTGCACTGCTTAAGCAGCATGAGAGACAGCATGAGAAAGAGAACAGTTTTCACTGTAGTTGTTGTGGGCAGGACTATAACACAGTGGAGTTGCTGAAGAGCCATTCTTGTCTCACTCCTGAGGAGAGGttacaaaaagaagcagaggaTGAAGCAGAGGCAGAGAGAGTTTCCCTTAACACACAGCTGGAGTCACTGCTTCAGGAACACAGTGGAGCTGAAGACAGGAATAACACAAATGGAAGCAGTGGGATTATGggtgaaattataatttatgtaacACAAGAAGGACAGGATGAACCAACTCAGGTTCACATCCAGCCCATGACTGGTCCAATCTTAGGACACACAGATCAACAAAAATCTTTGGTAGTGGTACCTAGCTCAGACATATCAGTCCAGAAGGTTGGGGCTGACAGTCAGCATAAACAAAGCCATAAAGATGTTTTACTCCTGGAAGATTGTGGCAGTACCAGTCAGATGGTAACAGATCTTGGTGGAACACTGTCAACACCACTGCAGTTCGAGTTTTGCAATTCTGGGATCACTGTTTGCACCAGTGAGGGGAACAACAGGAGTGACAGGACTGACTGTAGCAACCCATCTCTCTTCCCCCAGCACATGGTCACGACCCTGGGAAGTGATAGCAGCAGCGATAACTTTGTTACAGGTGGTGATGTTCTGGGAGAACCTAGTCACGACTCAGACTGTGATAATGGCATGCCAAACGCAATAGGAATGACATCTGTGCCAAAGAAAGAAGTAATAAAGACAGAAGAATGTGTGGATATATTAGTTCCAGAAATTGAATCTACTGGCATGTCGTCAGAATCTGTTGCTGTCCACAGTAAAACAATGCCTGCTACTGGCAAGAAACAAGTGCGAGTGTACCAGTGTCCCGAGTGTCCAAAAACTTTTGTTAAGAACAGCAACTTCAAACAACATTTAGGTATTCACTTCATTGACCAGCAGCGTTACCACTGCTCAGCCTGTGGTCAGTCTTTTGCTTGGAAGTCAACACTGAACAAACATATGCTCACTCACAGTATAGGTCCCCTTCCTCGCTACAGATGTAACCTCTGCAGCAAAGAATATGCTGCTGCTACACAGGTTCAGGAACACATTAAACGGGACCACTATAAGCAAAGGCCACATGCCTGTGTTGTTTGTGGCAAAACTTTCTATAAGAAATATGATCTCAAAATACATGTCAGAACTCATACAAAAGAGCGACCATATATTTGTGGGACATGTGGGAAAAGTTTCTATCATCTTTCTCACATAATACGTCATGAACGCATTCATTCTGGTCAGCGACCATATCACTGCCCTGACTGTGGCCGTCAGTTCAATCAGTCAAGTTCACTCAAGAGTCACAGGCAACGTCACAACCAATGTGTGAGAAAATCTGTGCTAACCGGACTTGAGCTGGCACCTGCAGAACTGGTACAACCAGAGTTTCCAGATATTGTGCCAGATCCAGGTCTTTTATATGCAGGAACTGATCTATAA
Protein Sequence: MDDVDRNLALASLGSEERRERCEIASATSTATTCTTTTEGGIDRSMVIYVQQEQQQLPDPLLTTAGSNYTEQQLITLVPQNLTERVNESLTSSAQPQTLPEEDMVTSLLGSVMTNCTGDDTLLSQQRTGAFHTADGQILYVTYTVNPTLDEVIATHQPFASEISQRMVLHVTDYGSTLVLPAENVEVGGFDVESGLVPQLTGVYSLVTNDSLSEDPAACPLVQTSDMKITKEEEKLKQRPFVEINNRRRTEQVIGNELHIEQKLEVLDAMLTPAPERPRKRKSDPITEDRERIYICDLCETAFSRANQFYGHLHSHSGERNWECAICPGKVVFPSQSLLRRHERESHLNLRPHTCGVCAARFDRVSQLSYHQRRIHAGERGHVCQICHKAFFKRSDLKTHLNIHLGINKCICETCGKKFNHVSNLIRHTRMHSGIKPYPCTVCGRRFSQLNALHQHKTSHQTNKDVACSICRKMFKSHMVMRKHVRQLHRDKLAASGKDANSVLKIKDGAQSRRFYCKVCGENFEFSALLKQHERQHEKENSFHCSCCGQDYNTVELLKSHSCLTPEERLQKEAEDEAEAERVSLNTQLESLLQEHSGAEDRNNTNGSSGIMGEIIIYVTQEGQDEPTQVHIQPMTGPILGHTDQQKSLVVVPSSDISVQKVGADSQHKQSHKDVLLLEDCGSTSQMVTDLGGTLSTPLQFEFCNSGITVCTSEGNNRSDRTDCSNPSLFPQHMVTTLGSDSSSDNFVTGGDVLGEPSHDSDCDNGMPNAIGMTSVPKKEVIKTEECVDILVPEIESTGMSSESVAVHSKTMPATGKKQVRVYQCPECPKTFVKNSNFKQHLGIHFIDQQRYHCSACGQSFAWKSTLNKHMLTHSIGPLPRYRCNLCSKEYAAATQVQEHIKRDHYKQRPHACVVCGKTFYKKYDLKIHVRTHTKERPYICGTCGKSFYHLSHIIRHERIHSGQRPYHCPDCGRQFNQSSSLKSHRQRHNQCVRKSVLTGLELAPAELVQPEFPDIVPDPGLLYAGTDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01289161;
90% Identity: -
80% Identity: -