Pser004935.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_905333025.1
- Location
- HG995153.1:27632425-27634665[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0062 46 4.5 0.0 13 48 235 270 228 275 0.78 2 5 0.00066 4.9 7.7 0.1 21 48 340 367 322 371 0.84 3 5 0.14 1e+03 0.2 0.1 16 41 392 417 380 423 0.79 4 5 0.03 2.2e+02 2.4 0.0 18 43 450 475 447 481 0.89 5 5 0.00011 0.83 10.1 0.0 21 44 481 504 478 507 0.92
Sequence Information
- Coding Sequence
- ATGAATAACGAACAAGTGGAGGGCGCTGGCCATTTGGAAATTGTCAACATAAACAGTGTTTGCCGATTATGTGCTAACCAAAAGGACAAACTCATCAGTATTTACGGAGACGAAGGGGTAGCTCACGATTTGGCCAACAAAATCAACCTACATTTACCGTTTAGAGTCAATGACAATGACGAGCTGCCCTTGCAATGTTGTTGGGGCTGCGTTTCGACATTACTTGCCTGGCACGACCTTGTGATCACCAGCGTAGAAGCTGAGCAAAGGTTCCGAACAGGTCAGCTGATCGGTGGAAAACACATGGTTCAGCACATCACTTTCGAAGCAGCCGAAGACATCACCAACGACCAGAATGACACGATGGAACTGGAGCCGATGGCCACAAGTCTGAATGATTTCTGCCAATCCGAGGCGATTTCTTCCACGCCAGAAGACGACAAAAAACCTATCAAACAATACAAGAACAAGAAGAAACCGAACTTGATGCCGTTCTACCCCCAAGAACCTACCAATTCCTTAGAAAACTACATATCAGACATCGAACAACATTTTATAGTCGACACAAATCTCGAAAACAACGCCGACAGTCTCGGCGAATACAAAATTGACATAGAAGACGCCAATATGTTAGCGAAAGAAGAGAAGAAACTATGCGAAGATATTGTAACCGAAGATAATTCGCGAGGTGTTTCCGGTAACGACAGCGATGAGTCGAAAGAAGAGGAAGAAAAGGTTTATGCTTGTCCGTATTGTTCTGCCGTTTTTGTTTTGAAATGTGACGTCACTAATCATATTTGTGTCGATCATCCGGGTAAAGAATGTTTGTCGCCGATAGAACAACAATTTCCTGATCAAAAACTCAAAACTGAACGCAGAAAAAACAACAAGATCGACCAAGACGTTATTAATGCCGCCAAAGTTGTGGTTGACGGCCGTATTTACTACAATTGTAAAGAATGCGGGAAAAGTCTTCATTCACCATACACTTACGTTTGGCATATGCGGATACATACGGGAGAACGTCCATACGTTTGCGATTTATGCGGCAAACAATTTAGGGTGTCGCAAGGGTTAGTTCGTCATCTACGAGAGACGCATCAAGGAATCAAGAAATTTCCTTGCGACCTCTGCGGACGAATGTTTGCAACACGGAGAAATGTCGAGGAGCATCGCAGGATTCACACGAATGAGCGACCGTACATTTGCGATTTGTGCGGTAAAGCTTTCAAACAGAAAGCTTCGCTTTTTGTGCACAAGAGGTCGCATAAAAATTATTTTCCTTTCAAGTGCAGCTATTGTAATCAAGGATTTCGAACTAGACCACCGCTACTCGTTCATATTACCCGTCATACTGGAGAAAAGCCATACAAGTGTGACACGTGCGGCAGAAGTTTTAGGATTAAATACGAACTTAAAAGACACAAACTCATCCATTCGGACGAGAAACCGTTTGTTTGTTCGTTATGTGGACTCAGTTTTCGACAAAAACGGTATCTGAGAAACCATATGAAGTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGGTAG
- Protein Sequence
- MNNEQVEGAGHLEIVNINSVCRLCANQKDKLISIYGDEGVAHDLANKINLHLPFRVNDNDELPLQCCWGCVSTLLAWHDLVITSVEAEQRFRTGQLIGGKHMVQHITFEAAEDITNDQNDTMELEPMATSLNDFCQSEAISSTPEDDKKPIKQYKNKKKPNLMPFYPQEPTNSLENYISDIEQHFIVDTNLENNADSLGEYKIDIEDANMLAKEEKKLCEDIVTEDNSRGVSGNDSDESKEEEEKVYACPYCSAVFVLKCDVTNHICVDHPGKECLSPIEQQFPDQKLKTERRKNNKIDQDVINAAKVVVDGRIYYNCKECGKSLHSPYTYVWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHQGIKKFPCDLCGRMFATRRNVEEHRRIHTNERPYICDLCGKAFKQKASLFVHKRSHKNYFPFKCSYCNQGFRTRPPLLVHITRHTGEKPYKCDTCGRSFRIKYELKRHKLIHSDEKPFVCSLCGLSFRQKRYLRNHMKSXXXXXXXXXXXXW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01330041;
- 90% Identity
- iTF_01283666;
- 80% Identity
- iTF_01283666;