Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: L
Assembly: GCA_905333025.1
Location: HG995160.1:8558940-8566539[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00067 0.046 14.5 0.9 1 23 51 73 51 73 0.99

2 20 0.12 8.4 7.4 4.8 1 23 79 101 79 101 0.97

3 20 1.2e-06 8.6e-05 23.1 3.2 1 23 107 129 107 129 0.99

4 20 0.00018 0.013 16.3 0.3 1 23 135 157 135 157 0.99

5 20 0.00031 0.022 15.5 1.1 1 23 179 202 179 202 0.93

6 20 0.076 5.3 8.0 0.4 2 23 229 251 228 252 0.93

7 20 0.013 0.92 10.4 0.2 1 23 283 306 283 306 0.96

8 20 0.014 0.94 10.4 0.0 3 23 413 433 412 433 0.97

9 20 0.001 0.07 13.9 1.9 3 23 443 464 441 464 0.90

10 20 0.0019 0.13 13.1 0.7 1 23 469 492 469 492 0.95

11 20 0.0019 0.13 13.1 3.1 1 23 557 580 557 580 0.97

12 20 1.7 1.2e+02 3.8 1.4 1 23 627 650 627 651 0.88

13 20 5.9e-05 0.0041 17.8 2.6 2 23 662 683 661 683 0.97

14 20 0.00095 0.066 14.0 1.1 1 23 692 714 692 714 0.98

15 20 0.43 30 5.7 0.3 3 16 791 804 789 806 0.90

16 20 0.19 13 6.8 0.1 2 23 846 867 845 867 0.90

17 20 0.00098 0.068 14.0 0.4 2 23 876 897 875 897 0.95

18 20 0.052 3.6 8.5 0.0 1 23 905 927 905 927 0.96

19 20 0.035 2.4 9.1 1.6 1 23 934 956 934 956 0.97

20 20 3.8 2.6e+02 2.7 0.5 3 21 985 1003 984 1004 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00067	0.046	14.5	0.9	1	23	51	73	51	73	0.99
2	20	0.12	8.4	7.4	4.8	1	23	79	101	79	101	0.97
3	20	1.2e-06	8.6e-05	23.1	3.2	1	23	107	129	107	129	0.99
4	20	0.00018	0.013	16.3	0.3	1	23	135	157	135	157	0.99
5	20	0.00031	0.022	15.5	1.1	1	23	179	202	179	202	0.93
6	20	0.076	5.3	8.0	0.4	2	23	229	251	228	252	0.93
7	20	0.013	0.92	10.4	0.2	1	23	283	306	283	306	0.96
8	20	0.014	0.94	10.4	0.0	3	23	413	433	412	433	0.97
9	20	0.001	0.07	13.9	1.9	3	23	443	464	441	464	0.90
10	20	0.0019	0.13	13.1	0.7	1	23	469	492	469	492	0.95
11	20	0.0019	0.13	13.1	3.1	1	23	557	580	557	580	0.97
12	20	1.7	1.2e+02	3.8	1.4	1	23	627	650	627	651	0.88
13	20	5.9e-05	0.0041	17.8	2.6	2	23	662	683	661	683	0.97
14	20	0.00095	0.066	14.0	1.1	1	23	692	714	692	714	0.98
15	20	0.43	30	5.7	0.3	3	16	791	804	789	806	0.90
16	20	0.19	13	6.8	0.1	2	23	846	867	845	867	0.90
17	20	0.00098	0.068	14.0	0.4	2	23	876	897	875	897	0.95
18	20	0.052	3.6	8.5	0.0	1	23	905	927	905	927	0.96
19	20	0.035	2.4	9.1	1.6	1	23	934	956	934	956	0.97
20	20	3.8	2.6e+02	2.7	0.5	3	21	985	1003	984	1004	0.90

Sequence Information

Coding Sequence: ATGAATAATGTTTTAGTGACAGAGGATGAGACTGCTGGTAGTTCGGGATCTGGTGGTTCTGCATCAGGGGAAACCGTGCACGGTTTTGAGGAACTAGTCCAAGGGTCCGAAGAGCCAATGCATGGAGATCAAGATAGCAAGCCGGGTCCGTACAAATGCACGGTATGTGGAGCAAATTATTATAAAGAAAAACAGCTCAGGGACCACGAACAGACTCACACGGATCATCTTCAATTTACTTGCGCTTACTGTCCCAGACTTTTCAAGCACAAGCGGTCCAGAGATCGACATACCAAGCTACACACAGGAGACAAGAAGTACAAGTGCCAACAATGTGATTCAGCTTTCTCGAGAAGTGATCATCTAAAAATTCACATGAAAACACATGATAGTCGCAAACCCTACAAATGTGGTACATGCAATAGAGGCTACAATACAGCTGCAGCATTATCATCGCATCAACAGAGCCATTTAAAGCAAGAATCCAGGTCCGGAAGCCGAACAAGTGGGGGAAGTACCCCAAGTCCGGGAGTCTTCCGGTGTAATCACTGCACTGAAAGTTTCGGAAAATCCGACCTCTTACAGAACCACGTAGCATTGATGCATAGCGATACTGATTCAACTTTGAGTCAAACCCCTGAACCCTTATCTGAATACCAGTCACAAATTGATGATTTGAAAATAGTTTGCATGTATTGCTCCAAAGATTTTCCCAGTCTTGATTTAATGTACCAACATACTAGTATCGCACATCATGATGTTCCTAATGGATCTAATCTTTCGATACCTTCACCAAATTTACAAAATTCTCCGAAACCTGAAATTTACCAAAACGGAACTCCAACATACGCTTGTGATAGATGCACAATGCAATTTGAATCAGTTCAAAATCTTAAAGAACACGTAAATTCAGTACATTGGAGACCAACAGTTTCGCCAAATCCCATGAAAGATTACGGTTTTGGTGTCATCCAAAGTTTAGGTCTTGAAAAAAGTTATTCACCATTCCAAACACAACCAACAGATTTGAGTCGTAAAAAGCGCAAAGATGAAACTATTGAAAAATTATCGAAGAAAAAAAAACAAGAACTTTCACCAACAACTGTTAGTCCTTATGATTCCAATGATAAACCTTGCATTTGTTCTTGTTGTTACGCTCAATTACCCAATTTTAAAAGTTTTCTTCATCACATGGAAACTCATATGGTATCAACCAACAATTCACTTTTGGGATTTTGTCCTGTTTGCGGAGAACCTGGACGAGATCCTGTTACGTTCACTAATCACATCTTCAGCCATGCCATCGCTCAAGTACCTGGACGTTGCTGTTATGCTTGCAAAAAATCTTTCGAAAGATCCGACGAATTACAGAAACATCTCCTAGAAGTTCATGTGGTTTCCGTTTTTAAATGCTCCATTTGTAACGAAATTTTTGATAGCAAAATTTCTATGCAGTTACATTTGTCGAATAAACACAGTGATGAGTGTAAACATTTCAAGTGTTATTTATGCACGAATCAAGTGTTTCACGATCAACTCTCAGCCGAACTTCATATTTCAATGAAACACTATAACCAATTCGCACCTTGCTTGGGTAATAATCAGTCGTTATTGAGGCCCCAATATCAAATGGAACTGGATGCTCGATTGCGGGAATATGGCTTGGTGTTTCAGTGCAGCTTCTGTCGAAAATCCTTCAAGGACCAGTACTCGCAGTATATGCACATTCTGAAGGAACACAACGATTCTAAAGAGGGTGAGAAGTTTGTTTTGGATCAGCACCAGAATCCGTCCAGATCTCCAAGTTTCATGTTCCCGAAACTCCTATCGTCGCCCGAAAACAGCAAATTGGACACAAACTCCGTCGAAACAACAACCTTCATCTGTGATATTTGTAATCGTACTGATTTAACATCCGATTCCGATTTACAAACCCACAAAAAGTTACACCATGCGAAAAGTAAAGTAGGACCAGTAAGTCTCCAATGCGCTTACTGCAACGAATATTGCAAATCTCGCAGTGATTTGGAAAACCACATGAAAACCCATCAAGTCATTTGTGGAAAAGGCAAACATAAATGTAATATTTGCGATGAAATTTTCACATCGACATTAACATTAGCTGACCATAAGTTAACACATTGTAAAATAGTAGAAGGAAATAACTGTGTTCAATGCAAATCAGTTTTGACGGATGAACAATCGTTTTATACTCACCAATACCAGCACAGTAATAGTCCAGCTAAACCAAATTCGCAAATTTCTTTACCTGCTAATTGCATTATTTGCTGCCAAACTCTTCAAACTGACGTCGAAATTAAACTACATGCCAAATTTCATTTGAAGCATCTTTTACAGAAAGAGTGTTTGTGTGGAGTTTGCAAGAAAATTTTCGATACCCAAAGCGGTCTGGTTGTTGGTAATTTGGAGAAAAGTTCGGAAAATATTAGTGTTTCTTTATGCAAAGATTGCAGTAATAAAAACAATAACGGTAATGATTGCGATATTAAAAAAGTGTCACCTAGCAAACAATTTGCTTGTATCCAGTGTCCCCAAACTTTTGATAGTGAAAGTGATGTTCAAAGTCATGCCACAATGCACATGTTAAACGAAGGAACTAATTTGGAGTGTCGTCTCTGTAAACAAGTGTTTTCTTCCCCTTTTAAACTACAAACTCATTTGATTGAACACAATTTTTACGGGATGAACCAGTATAGTTGTTATGTGTGTTCTTCGGTTTTTACGGCAGCTAGTGGTTTACAAGGCCACATCATCGGACATGGTTTAGATAGTAGGCCGTATGAGTGCTCCCAATGCCAGATGAAATTCTTTTTTAGAGCAGAATTGGATAATCATCGTTTCGTCCACGTAATGCAGTCACCGATTCAGAACAATTATTCTCTATCTAACGGAGTTGATGCTCTATACGAGAAAAATCAGCAATTTAAAATTTGCAAATACTGCACCAACTCATTTTTGGACAATTCATTTTTCTTGGAGCACCTGAATCAATGTCCCTTTAGAATAAGTCCCAAACAAGAAATGTTTGATTCAGCCGGAAACGATGTTGACAATAATATAAAACAAGAAGTTACTGAAATCACGTCGGAACTCATCATTGACAAAGAGGAGCAATAA
Protein Sequence: MNNVLVTEDETAGSSGSGGSASGETVHGFEELVQGSEEPMHGDQDSKPGPYKCTVCGANYYKEKQLRDHEQTHTDHLQFTCAYCPRLFKHKRSRDRHTKLHTGDKKYKCQQCDSAFSRSDHLKIHMKTHDSRKPYKCGTCNRGYNTAAALSSHQQSHLKQESRSGSRTSGGSTPSPGVFRCNHCTESFGKSDLLQNHVALMHSDTDSTLSQTPEPLSEYQSQIDDLKIVCMYCSKDFPSLDLMYQHTSIAHHDVPNGSNLSIPSPNLQNSPKPEIYQNGTPTYACDRCTMQFESVQNLKEHVNSVHWRPTVSPNPMKDYGFGVIQSLGLEKSYSPFQTQPTDLSRKKRKDETIEKLSKKKKQELSPTTVSPYDSNDKPCICSCCYAQLPNFKSFLHHMETHMVSTNNSLLGFCPVCGEPGRDPVTFTNHIFSHAIAQVPGRCCYACKKSFERSDELQKHLLEVHVVSVFKCSICNEIFDSKISMQLHLSNKHSDECKHFKCYLCTNQVFHDQLSAELHISMKHYNQFAPCLGNNQSLLRPQYQMELDARLREYGLVFQCSFCRKSFKDQYSQYMHILKEHNDSKEGEKFVLDQHQNPSRSPSFMFPKLLSSPENSKLDTNSVETTTFICDICNRTDLTSDSDLQTHKKLHHAKSKVGPVSLQCAYCNEYCKSRSDLENHMKTHQVICGKGKHKCNICDEIFTSTLTLADHKLTHCKIVEGNNCVQCKSVLTDEQSFYTHQYQHSNSPAKPNSQISLPANCIICCQTLQTDVEIKLHAKFHLKHLLQKECLCGVCKKIFDTQSGLVVGNLEKSSENISVSLCKDCSNKNNNGNDCDIKKVSPSKQFACIQCPQTFDSESDVQSHATMHMLNEGTNLECRLCKQVFSSPFKLQTHLIEHNFYGMNQYSCYVCSSVFTAASGLQGHIIGHGLDSRPYECSQCQMKFFFRAELDNHRFVHVMQSPIQNNYSLSNGVDALYEKNQQFKICKYCTNSFLDNSFFLEHLNQCPFRISPKQEMFDSAGNDVDNNIKQEVTEITSELIIDKEEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568303;
90% Identity: iTF_01330049;
80% Identity: -