Pser017580.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- bab2
- Assembly
- GCA_905333025.1
- Location
- HG995157.1:8171987-8173815[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-14 1.3e-11 44.3 0.1 3 45 362 404 360 404 0.92 2 2 0.23 2.4e+02 1.9 0.2 6 18 473 486 471 488 0.81
Sequence Information
- Coding Sequence
- ATGTGCGCGGCTCAGCAATATTGTCTCCGATGGAACAACCATCGTTCAAACCTGCTGACCGTTTTTGAGGAACTCCTCCAGAATGAAGCCTTCACCGATGTAACTCTTGCATGCGAAGGCGGCACAATCAAATGCCATAGGATGGTGCTGGCCGCTTGCTCCCCTTATTTTCAAAATCTTTTTACCGACCTCCCCTGCAAACATCCCGTCGTTGTTCTAAAAGACGTTAAATATAGCGAAATTAAGGCGATACTCGAGTACATGTATCGAGGCGAAGTTAACGTAGCTCAAGATCAACTCGCCGCATTGCTCAAAGTTGCCGAAGCTTTGAAAGTTAAGGGTTTAGTCGAGGAAAATCGTTCGACCGGTAGCAGTTTTTCTAGTAATAGAGAAGATGAAGCCATGGACCATTCCCCAACGGGGATTAGTACTTCAAGCGCTCAAAACGTGCACAGTAGTAGCAGTAATAATTCCCCACCACATTCGACAAATAACCACTACAAAAACCCATATGGTAGTATTTTTCCTGGAAAATCCGGAAATATGGAGAGAGGGTCCAGGATGAATTTGCCTTTGTGGGCGGTGCCAGGTTTACCTATTCCTCCCCATTCTAGTTCTGTTCCTAACCAAACCCACCCCCATTCCGCCGCTACAGCAGCCGCTGCTATGTTGAGTAGTTGCTACGAAGCTGCCAGCGACATGTCACCGTTGAGGAGGAAAAAACTGTCAAGTCTTCTCATGAACAGAGATACGCCTATTTTGAGAACAGTTCTGGGACAAGGCCAGGTCGATTCCTCGCAACCTGTCAGCTTGGTCTGCCATCCCGACAGTCACGACCAAACTTCGAATGGACCCGACCAAGATCATCTAGTAAAGCATATGAAAAATGAACCTTCAGAAGACGCCCAATCTCCTTATACGGACTTCACAGTAATGAACGACGAAGAAGAGAAATCAAAATTAGCAATCCCCTCTTCCTCCCCCCAGTCATATTCGAGTGAGATGCGCGGGGTCACTTCTGGAATTGCAACATACGTTCCAACGCAGAAACCGGAATGGAAACGCTACAAGCAATACACGCGCAACGACATCATGTCGGCAATAGATGCAGTGAGGAACGGAATGTCCGCCCTCCAGGCAGCTCGAAAATATGGTGTTCCATCACGTACCCTCTACGATAAAGTCAAGAAACTCGGCATAACCACGAGTAGACCTTTCAAAAGAGGTTCCAATGGAAGTCCTGCTTGTTTCCCTTATGGACTGAGCGGAACTGGATCACCTTATAGTGGTCATTTATCAGAAAGTGACGATCCTCCAACAAACAACAACACGTCATTACTTGAAGCCACTTTTCTACAACACGCTTTTGAGGGTCGTGGTGGAGACGATAGGGAAGCTCTGGCGGCAATGGCGGTCGCAGCAGCGGCTCATGCTGTAGTTTCCGGGCATTCGACGAGTCCTTCGAATCATGGACACGCGACTAGTCCGAGTCCGAGTCCAACTTTAATGAAGTATATGAGACAAAATAGTATGACGCCGTCTCCGGCGCCAGGTAGTGATCATCATCATAGCGAAACTAACGGTAGTTCTGAGAGGGATCGTGACGAAGAGGATGATCAAGTTGAAGATTTGTCGGTTGGAAGGAAACATGAATCGAGAGTTATCATGCCTCCGATGAATCAAGTTTCTACGATAATGAAAAAAGAGGAATTGTTAAAAGATATCATCAAAGATGAGGCGAGGAGGGAGGTAAGCGTGGAAGAAGGGGAATAA
- Protein Sequence
- MCAAQQYCLRWNNHRSNLLTVFEELLQNEAFTDVTLACEGGTIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSTGSSFSSNREDEAMDHSPTGISTSSAQNVHSSSSNNSPPHSTNNHYKNPYGSIFPGKSGNMERGSRMNLPLWAVPGLPIPPHSSSVPNQTHPHSAATAAAAMLSSCYEAASDMSPLRRKKLSSLLMNRDTPILRTVLGQGQVDSSQPVSLVCHPDSHDQTSNGPDQDHLVKHMKNEPSEDAQSPYTDFTVMNDEEEKSKLAIPSSSPQSYSSEMRGVTSGIATYVPTQKPEWKRYKQYTRNDIMSAIDAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSPACFPYGLSGTGSPYSGHLSESDDPPTNNNTSLLEATFLQHAFEGRGGDDREALAAMAVAAAAHAVVSGHSTSPSNHGHATSPSPSPTLMKYMRQNSMTPSPAPGSDHHHSETNGSSERDRDEEDDQVEDLSVGRKHESRVIMPPMNQVSTIMKKEELLKDIIKDEARREVSVEEGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277622;
- 90% Identity
- iTF_01329710; iTF_01329913; iTF_01283516;
- 80% Identity
- iTF_01283516;