Pnig021302.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438953.1:6754172-6765207[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.54 48 5.6 4.1 2 19 81 98 80 103 0.91 2 12 0.85 77 5.0 3.8 2 23 111 133 110 133 0.93 3 12 0.00025 0.023 16.1 1.4 1 20 138 157 138 159 0.96 4 12 1.4e-06 0.00013 23.2 0.6 1 23 170 193 170 193 0.97 5 12 4.2 3.8e+02 2.8 1.6 2 23 200 224 199 224 0.84 6 12 0.00048 0.044 15.2 0.2 1 23 230 252 230 252 0.97 7 12 0.00055 0.05 15.0 0.9 1 23 257 279 257 279 0.98 8 12 2.9e-05 0.0026 19.0 1.2 1 23 285 307 285 307 0.98 9 12 0.00034 0.031 15.7 0.8 2 23 311 332 311 332 0.98 10 12 1.2 1.1e+02 4.5 0.3 3 23 340 365 338 365 0.83 11 12 0.00021 0.019 16.3 0.2 1 23 371 393 371 393 0.98 12 12 3.7 3.4e+02 3.0 0.3 3 23 401 423 400 424 0.79
Sequence Information
- Coding Sequence
- ATGCCACCTAAACGGAAGAAGAACACTAAGCCTGTTAGGgtcaaaaaaaggaaaataaacaaacttaaacGAACTGTAAAATTAGAAGTAAAGAATGAATGGAGCCTTGATAGTGTTGATCGACCAGTCTGTGGTATCTGCGATGGGAGTTTTGATTATGATGATTCCTTGACTGGGCAGACTAAATTTTGTAGATGTCAGAACTTGCTTACCAAAGTTGGAGCAACAAAGAAAACCTTAAAATGCAAGAAGTGCCCAAAACTTTACAAATTTGAAAAGAATTATATAAAACACTGCTTAAACGAACATTCAAAGACTCCAGGGAGTGTTTCTTGCGCACAGTGTCATGTCTCCTGTcccaacaaaaaagttttattgaaaCACATTGAACATACACACAATCGTAAAGAGTACAAGTGCCCTAATTGTAAGAAGAACTTTGTGAGACATGCACATGTCTTGAGACACTTGGCCCAAAGCGGCTGTAATGGTGGCCCAACAGCATCATATCCCTGTGAGatttGCAATTCTACATTTTCAAGAAAAGATAACTTGATGGTGCACCTTCGTTATcaacacattttaaataaatcattttcatgtaaactTAAACCTTGTTCTTATCAAACCAAGAATTTTTCTAAACTTATCAAGCACTGGATGTACACACACAATGACCCTATAAAATTTGAATGTGACATTTGCGGAAAATTAACATCATCCCGAACATCGATGGCCAAGCACTTGGAAATCCATGGAGAAAAGAAGTATATGTGCAAtacgtgCGGGTACACCACATTCACGGCGGAGGTTCTGAAGCGGCACACGCTCACCCACGTGAGCGAGAAGCCGCACAAGTGCGAAATTTGCGGCCTGTCGTATATCCAGCGCCTACAACTACAGCGCCACCTGGAGCGCCACGTGGCCAACACGTGCGGCACTTGTGGGCAGAAGTTTAACACCAAGGCCAGattactTATTCATGAAAGGACACATTTGGGACTGGATCGACTTGTATGCCCATTTGAAACCTGTCCAAATTCGAAGAAGGAGTTCAGTAACGAGGTTAGCCTTCATTCTCATGTGCAAGGGCACCTAAACCaaaaaaAGTACCCGTGCGAGgtgtgcggcaagcagtacttCTCTGACGTGAACATGCGCCGGCACCTGGCGACGCATAGGCTGGACAAGCCGCGCCGCTGCATGTACTGCGTGGCGGCGCGCGCCTACATCCGCGGCGAGCAGCTCGTGCGGCACGTGCGCGCGCACCACCCCGACATGTTCGCCGCGCACCTCGCGCACGTGCGACAAGTGATGGGCACGAACATCGCCGTGGACCGCGTGAAGAAGTCTGAGCTGGAGTCGATCCTGACGCTGCTGGACGCGGAGTCGGAGCGCATACTGGACGGGTACTCGGGCTCCGGCGTGCTGTACGGAGGCATGCAGGACGAGCCCGCCCCGCCCGCCTCCTCGGCCACTACCGCGCTTACCGACCTGCCAATCaagtacGAACCTAGCCCACTGATGTCTGAAGAAGAACTTGAGGAAAATTTGAAAAAGCTGCTGTCACAATTGATCGACCTGGATACCTTGGAATGCTTTGGGTGGCCAGACGAGAGTATCGATGCGgtgCTGGAAAAGGTGATAGTGCAGTGCGGCGCGCGCGCGGCGGACCGGTCCCGCTGGTCGCGCGTGCAGTGCCTGCGCGAGAACACCAAGCACCTGTTCCTGTACGCCGTCGAGGACAAGCAGGTGGCGCGCATGCTCGACACGCACACCATCGACCAGATCGTCGTGCACATACTCGACCAGGTGGCCGAGTGA
- Protein Sequence
- MPPKRKKNTKPVRVKKRKINKLKRTVKLEVKNEWSLDSVDRPVCGICDGSFDYDDSLTGQTKFCRCQNLLTKVGATKKTLKCKKCPKLYKFEKNYIKHCLNEHSKTPGSVSCAQCHVSCPNKKVLLKHIEHTHNRKEYKCPNCKKNFVRHAHVLRHLAQSGCNGGPTASYPCEICNSTFSRKDNLMVHLRYQHILNKSFSCKLKPCSYQTKNFSKLIKHWMYTHNDPIKFECDICGKLTSSRTSMAKHLEIHGEKKYMCNTCGYTTFTAEVLKRHTLTHVSEKPHKCEICGLSYIQRLQLQRHLERHVANTCGTCGQKFNTKARLLIHERTHLGLDRLVCPFETCPNSKKEFSNEVSLHSHVQGHLNQKKYPCEVCGKQYFSDVNMRRHLATHRLDKPRRCMYCVAARAYIRGEQLVRHVRAHHPDMFAAHLAHVRQVMGTNIAVDRVKKSELESILTLLDAESERILDGYSGSGVLYGGMQDEPAPPASSATTALTDLPIKYEPSPLMSEEELEENLKKLLSQLIDLDTLECFGWPDESIDAVLEKVIVQCGARAADRSRWSRVQCLRENTKHLFLYAVEDKQVARMLDTHTIDQIVVHILDQVAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279607; iTF_01282700; iTF_00076928; iTF_00074873;
- 90% Identity
- -
- 80% Identity
- -