Paur022670.1
Basic Information
- Insect
- Pyrausta aurata
- Gene Symbol
- -
- Assembly
- GCA_963584085.1
- Location
- OY757271.1:4461607-4467013[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.33 28 6.2 4.7 2 19 81 98 80 103 0.91 2 12 1.2 1e+02 4.5 1.0 2 23 111 133 110 133 0.93 3 12 0.00021 0.019 16.3 0.8 1 20 138 157 138 159 0.94 4 12 1.5e-06 0.00013 23.0 0.5 1 23 170 193 170 193 0.96 5 12 0.2 18 6.9 2.0 1 23 199 223 199 223 0.95 6 12 1.7e-05 0.0014 19.8 0.2 1 23 229 251 229 251 0.98 7 12 0.0011 0.097 14.0 2.2 1 23 256 278 256 278 0.98 8 12 1.4e-05 0.0012 20.0 1.5 1 23 284 306 284 306 0.98 9 12 0.00024 0.02 16.1 1.4 2 23 310 331 310 331 0.97 10 12 2.4 2.1e+02 3.5 0.3 3 23 339 364 337 364 0.82 11 12 0.00014 0.012 16.8 0.4 1 23 370 392 370 392 0.98 12 12 2.9 2.5e+02 3.3 0.3 3 23 400 422 399 423 0.80
Sequence Information
- Coding Sequence
- ATGCCCCCAAAACGGAAAAAGACCACTAAATCTACTAGGGTAAAGAAAAGGAAGATAACTAAACAAAAAAGTGTGGTTAAATTAGAAGTAAAGGAAGAAAGATTATTCGACAGTGTTGAACGACCTATCTGTGGCACCTGTGATGGgtattttgatgatgatgattccgTGGCTGGTGGTGACATAAAAATTTGTCAGTGTCCGAATTTACTGGCTAAAATTGGACCCAGGAGAACTCTCAAGTGCAAGAAGTGCCCAAAactttacaaatttaaaaaaagttacataaGGCACTGTTTAAATGAACATTCCGAGACTCCAGGAAGTGTTTCCTGTGCGCAGTGTAAGGTCTCCTGTCCcaacaagaaaatattattgaagCACATTgaaaatacacacaatcgtaagGAATTCAATTGCGCCAAATGTGGCAAAACATTTGTGAGACATGCACATGTTTTGAGGCACTTGGCACAAAGTGGTTGTGATGGTGGCCCTACAACTTCATATCCATGTGACATCTGCAATGCGAAATTTTCTAGAAAAGACAACCTTATGGTGCACCTGCGTTTTCAACACATTTTAGGTAATGCATATTCATGCAAACTGTCATGCGAATATCAAACCAAGAACTTTTCAAAACTTATCAAGCACTGGATGTACACTCACAAtgACCCTGTTAAATTTGAATGTGACATTTGTGGAAAATCAACATCTTCTAGAACATCAATGGCTAAGCACTTGGAAATACATGGAGAAAAGAAATATGTTTGCAATGTGTGCGGGTACTGCACGTTCACGGCGGAGGTGCTCAAGCGGCACACGTTCACGCACGTGCACGAGAAGCCGCACAAGTGCGACATCTGCGGCCAGTCGTACATCCAGCGCCTGCAGCTGCAGCGCCACCTGGAGCGACACGTCGCCAACACCTGCACCACTTGCGGACAGAAGTTCAACACTAAAGCCAGATTGATGATTCACGAAAGGAGTCATTTGGGCTTGGATCGTCTGGTGTGCCCGTTTGACACCTGCCCGAACTCGAAGAAAGAGTTCAGCAATGAGCTCAGTCTTCATGCTCACGTGCAAGGGCACTTAAACCAGAAAAAGTACCCGTGCGAGGTGTGCGGCAAGCAGTACTTCTCGGACGTGAACATGCGTCGGCACCTATCTACGCATCGGCTGGACAAGCCGCGCCGCTGCATGTACTGCGTGGCCGCGCGCGCCTACATCCGCGGCGAGCAGCTCGTGCGCCACGTGCGCGCGCACCACCCCGACATGTTCGCCACGCACCTCGCGCACGTGCGCCAGGTCATGGGCACAAACATAGCAGTGGACCGCGTGAAGAAGTCTGAGCTGGAGTCCATCCTGAACCTCCTGGACGCGGAGTCGGAGCGCATCCTGGACGGGTACAGCGGCTCGGGCGTGCTGTACGGCGGCATGCAGGAGGagcccgcgcccgccgccgccgccgccgccgccgccgcgcaCGGCACCGAGGTGCCAGtcaaggtaaaataa
- Protein Sequence
- MPPKRKKTTKSTRVKKRKITKQKSVVKLEVKEERLFDSVERPICGTCDGYFDDDDSVAGGDIKICQCPNLLAKIGPRRTLKCKKCPKLYKFKKSYIRHCLNEHSETPGSVSCAQCKVSCPNKKILLKHIENTHNRKEFNCAKCGKTFVRHAHVLRHLAQSGCDGGPTTSYPCDICNAKFSRKDNLMVHLRFQHILGNAYSCKLSCEYQTKNFSKLIKHWMYTHNDPVKFECDICGKSTSSRTSMAKHLEIHGEKKYVCNVCGYCTFTAEVLKRHTFTHVHEKPHKCDICGQSYIQRLQLQRHLERHVANTCTTCGQKFNTKARLMIHERSHLGLDRLVCPFDTCPNSKKEFSNELSLHAHVQGHLNQKKYPCEVCGKQYFSDVNMRRHLSTHRLDKPRRCMYCVAARAYIRGEQLVRHVRAHHPDMFATHLAHVRQVMGTNIAVDRVKKSELESILNLLDAESERILDGYSGSGVLYGGMQEEPAPAAAAAAAAAHGTEVPVKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281640;
- 90% Identity
- iTF_01282700;
- 80% Identity
- -