Acro017611.1
Basic Information
- Insect
- Anania crocealis
- Gene Symbol
- su(Hw)
- Assembly
- GCA_949315895.1
- Location
- OX438868.1:7203567-7228768[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.91 1e+02 4.9 3.3 2 19 80 97 79 102 0.91 2 12 0.058 6.4 8.7 1.0 2 23 110 132 109 132 0.96 3 12 0.0014 0.15 13.8 1.1 1 20 136 155 136 157 0.95 4 12 1.7e-06 0.00019 23.0 0.5 1 23 168 191 168 191 0.96 5 12 0.66 73 5.4 1.5 1 23 197 222 197 222 0.93 6 12 0.00049 0.055 15.2 0.2 1 23 228 250 228 250 0.97 7 12 0.013 1.4 10.8 0.4 1 23 255 277 255 277 0.95 8 12 2e-05 0.0022 19.6 1.8 1 23 283 305 283 305 0.98 9 12 0.00012 0.013 17.2 1.2 2 23 309 330 309 330 0.98 10 12 2.8 3.1e+02 3.4 0.6 3 23 338 362 336 362 0.82 11 12 6.5e-05 0.0072 18.0 0.5 1 23 368 390 368 390 0.98 12 12 3.5 3.9e+02 3.1 0.8 3 23 398 420 397 421 0.80
Sequence Information
- Coding Sequence
- ATGCCTCCTAAACGGAAAAAGACTATAAAATCTACTAGAGTGAAGAAAAGGAAAGTAACTAAACCTAAACGATTTATTAAACTAGAAGTGAAGGAAGAAATTACTAACAGCAGTATTGATAGTCCAATTTGTGGTCTATGTAATGGAGTTTTTGAGAATGATAATTCCTTGAATGCCCGAGTAAAAGGTTGTAAGTGTCAGCAACTTCTTAGCAAACTTGGAGCAAAGAGGACCTTAAAATGCTTAAAGTGCCCAAagctttttaaatttgaaaagagCTACATAAGACATTGCCTAAACGAACATTCCAAGACACCTGGTAGTGTCTCTTGTGCTCAGTGTCAAGTCTCATGtcctaataaaaatgtattattgaaACATATTAAAAGTACACATAGTAAAGAATTTATGTGCCCTAAGTGCTCTAGGAAATTTGTGAGACATGCACACGTATTAAGACATTTGGCCCAAAGTGGTTGTGATGGATCCCCAACATCATCATATCCATGTGAGATATGCGATTCCACATTTTCTCGGAAAGATAACTTAATGGTTCACCTTCGTTTTCAACACatattaaataattcatatcCATGTAAAGATACATCATGCAGCTATCAGACCAAGAATTTTTCTAAACTTATTAAGCATTGGCTCTACACTCATAATGATCCTTTAAAATTTGAGTGTGATATATGTGGGAAGTTAACATCCTCCCGAACGTCAATGGCAAAACACTTGGAAATCCATggagaaaaaaaatttgtttgtattaagTGTGGATACAGCACATTTACAGCGGAGGTACTGAAACGACACCTGTTGACGCATGTGCAAGATAAGCCACATAAGTGCGAAATCTGCGGTCAGTCATATATCCAGCGCCTGCAGCTGAAGCGCCACCTGGAGCGCCACGTTTCCAACACCTGCAGTACCTGCGGACGGAAGTTTAACACCAAAGCCAGATTAGTAATTCATGAAAGAACACATTTGGGATTGAATCGACTTGTGTGCCCATTTGATACATGCTCAAGTACAAAAGAGTTTAGTAGTGAGCTGAACCTCCACACTCATGTGCAAGCGcatataaatgaaaaaaAGTTCCCATGCGAGgtgtgcggcaagcagtacttcTCCGAGGTGAACATGCGGCGGCACCTGTCGACGCACCGGCTGGACAAGCCGCGCCGCTGCATGTACTGCGTGACCGCGCGCGCCTACATCCGCGGCGAGCAGCTCCTGCGCCACGTGCGCCAGCACCACCCCGACATGTTCGCCACGCACCTCGCGCACGTGCGCCAAGTGATGGGTACAAACATCGCCATAGACCGGGTGAAAAAGTCTGAGTTGGAATCGATCTTGACGCTGTTGGACGCGGAGTCGGAGCGGATACTGGACGGGTACAGCGGCTTGGACGTGCTGTACGGCGGCATGCAGGAAGACTCCAGCTCACAGACCACCGTTACCACTACCACAGATGTACCTATCAAGtacgAACCTAGCCCACTGATGGGTGAAGAGGAACTTGaagataatttgaaaaagttGTTGTCACAATTAATTGATCAAGATACTTTGGAATGCTTCGGGTGGCCAGACGAGAGCATTGATTCGGTTCTCGAGAAGGTGATAGTTCAGTGCGGCGCCCGCGCAGCGGACCGGTCCCGTTGGACGCGGGTGCAGTGCCTGCGCGAGAACACGAAGCACCTGTTCCTGTACGCCGTCGAGGACAAGCACATCGCGCGGATGCTAGACACGCACACCATCGACCAGATCGTGCTGCACATACTAGCTCAGGTCGCCGACGAGTGA
- Protein Sequence
- MPPKRKKTIKSTRVKKRKVTKPKRFIKLEVKEEITNSSIDSPICGLCNGVFENDNSLNARVKGCKCQQLLSKLGAKRTLKCLKCPKLFKFEKSYIRHCLNEHSKTPGSVSCAQCQVSCPNKNVLLKHIKSTHSKEFMCPKCSRKFVRHAHVLRHLAQSGCDGSPTSSYPCEICDSTFSRKDNLMVHLRFQHILNNSYPCKDTSCSYQTKNFSKLIKHWLYTHNDPLKFECDICGKLTSSRTSMAKHLEIHGEKKFVCIKCGYSTFTAEVLKRHLLTHVQDKPHKCEICGQSYIQRLQLKRHLERHVSNTCSTCGRKFNTKARLVIHERTHLGLNRLVCPFDTCSSTKEFSSELNLHTHVQAHINEKKFPCEVCGKQYFSEVNMRRHLSTHRLDKPRRCMYCVTARAYIRGEQLLRHVRQHHPDMFATHLAHVRQVMGTNIAIDRVKKSELESILTLLDAESERILDGYSGLDVLYGGMQEDSSSQTTVTTTTDVPIKYEPSPLMGEEELEDNLKKLLSQLIDQDTLECFGWPDESIDSVLEKVIVQCGARAADRSRWTRVQCLRENTKHLFLYAVEDKHIARMLDTHTIDQIVLHILAQVADE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281640;
- 90% Identity
- -
- 80% Identity
- -