Pnig031128.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- -
- Assembly
- GCA_949316185.1
- Location
- OX438964.1:2467993-2470353[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.7e-05 0.0025 19.1 4.2 1 23 8 31 8 31 0.94 2 22 0.0013 0.12 13.8 1.1 2 23 37 59 36 59 0.94 3 22 0.0002 0.018 16.4 0.2 2 23 68 90 68 90 0.96 4 22 2.4e-06 0.00022 22.4 1.1 2 23 99 121 98 121 0.95 5 22 4.1e-05 0.0037 18.6 2.1 2 23 129 151 129 151 0.95 6 22 3.1e-06 0.00028 22.1 2.1 2 23 159 181 158 181 0.96 7 22 2e-07 1.8e-05 25.8 1.0 1 23 187 210 187 210 0.98 8 22 0.56 50 5.6 1.9 1 21 218 238 218 241 0.82 9 22 0.019 1.7 10.2 0.7 3 23 262 283 260 283 0.90 10 22 0.016 1.5 10.4 0.9 1 23 311 334 311 334 0.97 11 22 0.45 41 5.9 0.9 2 21 342 361 341 362 0.93 12 22 0.013 1.2 10.7 1.5 3 23 372 393 371 393 0.95 13 22 0.0011 0.095 14.1 6.4 1 23 416 439 416 439 0.97 14 22 1.1e-05 0.001 20.3 0.6 2 23 446 468 445 468 0.96 15 22 3.6e-05 0.0032 18.8 2.2 2 23 475 497 474 497 0.94 16 22 0.0084 0.76 11.3 2.2 1 23 503 526 503 526 0.97 17 22 0.21 19 6.9 7.1 2 23 534 556 534 556 0.95 18 22 3.7e-05 0.0033 18.7 0.2 1 23 563 586 563 586 0.97 19 22 0.011 0.97 11.0 2.0 1 22 593 614 593 616 0.90 20 22 0.019 1.8 10.2 2.7 3 23 631 652 630 652 0.91 21 22 3.8 3.4e+02 3.0 0.5 3 14 674 685 672 688 0.83 22 22 0.21 19 6.9 0.2 1 16 702 717 702 719 0.90
Sequence Information
- Coding Sequence
- ATGTATCAGAATCTCCTTGACTTTTTCTGCGATTACTGCAGCCGAGCTTTTACCAGAAAATACAACCTTCAGACTCACATTGAGAACTGCCATCTCACAGCATCATGCCACTGCGAGATCTGCAACCAGACCTTCGGCAGCCCTGCTGGTCTACAGCTACACTTGTCCCGGGGCCACAACAGGTATGGCCAGTCTTCACCGGAATGCGACATATGTGGCAACATCTTCACAAGAAAACAGAACATCATATCTCATATGACTACCGTACACCTTCAAGGGGCCGCTCAAAGCACCCGTTGCGATTTGTGCGATAAAATCTTCACAACGGAATGGAACCTTAAGCGGCATATGAATCAGTTTCACAACCCCGATATACAGTATCCAACGTGCCATGATTGCAACAAAGTCTTTAAAGGAAAACACTTATTGATCGCTCATATTCAGGCGACGCATGTTATGGAGAAAGGAATCATCAAATGCCATCTGTGCGATAGAGTGTACACTAATAATAGGAATTTGAAAAGACATATTGAAATGTATCACGGAGAGAAAGGAGAGTTTCGATGCGACGTGTGCCCTAAAGTGTATACATCGAACCAGAGCTTACGGAGACACATCAGAACGAGCCATTACACCGATGACAACGAAGAGTATACGTGTGAATATTGCAACAAAGTCATAACTGGTAGAGAGAACCATAACAGCCACGTGTCGTTCTTTCACAAACCCGACACCAATTCGGTGGATTGCAGCGATGTGGTTTCATCCAAACACGATTACATTTGTATATCGTGTTCGAAAACGTTTGAAGATGAACCGATGCTGCGGCATCATGTTAAGACTGAACACTCGTTTAAAAGTTTCTATACGTATTGCAAGAAATCACTGTTGAAGCAAATAGGTAGacccaaaaatacaaaaatggtGTTCTACAACTGTGAGTACTGTATCAACTCGTTTGGAAGTGTTTACGAGTTCAAAGATCACATGAGAACGAACCACGATAAGGAATACTCGCTCTCAACCTGCAATGTGTGTTTCAATAAGTTTTACAGTAAGGAATCAATGTTGAACCACAAGAAGATCTGCTTACCTCCGCCAAACGTAAACCCGTGCAGTCATTGCGACAAACTCTTCACAGATATCTCCAGCTTGGAGTTCCATACACGGATCTTCCACCCGCAAGCACAGATAGCCGACTCAAACATCACTTCGACTAATATCGACGATTCGGACAGCAATTCGTACAAATGCAAGCATTGCGACCGCGTATACTACAGCGACAGATCGCTCAAGCACCACATAAAGCTGAAACACACCACAGACGAAGCGATGGAGTGTGAGTATTGTGGAAAAATTTGCAGCAACAAGTATTATTTGGCCTCGCACATCAAAATCGTTCACAACAACGACTCCTGGTCGAAATGTGATTACTGCGATAAACAGTTTAAGTCTAAAAGAAACATACGCAGGCACATTGAGTACACTCATCTGGGTATGCAGCGGTATAAATGTATCGAGTGTGAGACATTGTTTAAAGAAAAGAGGAGTCTCCGGAAACACGTGCGGACCAAGCATCCCAACTCAGCCTCATTCCCGCAATGCCACATTTGCCACAAGAGATTCGAGTCTGCCAAATCTTGCAAGATACATTTGAAACTGTTGCATTCTTTTAACATGAACACGTTTCCATGTGACCTTTGTTCGGTTTCGTTCAGCTCGAAAGAGGCGCTCACTATCCATTTGCAGACAAAACATTTGGCGGAAGACGAGATATACAAATGCGAAGTCTGCAACTTAGTCTTCAAAGGGCAAGAGAAGTTTGAGCAACACAACGAACTGTGTCACGTGAACGTCGTTCCTAATATAAAACAGAAGATCTTGCCACGTTGCATTATTTGCATGAAGGATTTTAGCACGCGAAAAACTCTCAAACGCCACATTAAAAAGTTTCACGACGAATTCGATGTGGAGGAATTAGCGAATTTTGGTTCCCGGCGTCGAGTATTCAATATCGACTGTGAGGAATGCGTGAAGAAATTTAGCGACGATTTCCACTTCAGCCTTTACCAAAAGTTACGGCATTTGAAGGAATCGGTCATTTTCAAGTGCGAAATATGCTCGACGTCGTATAACTCGTTGGAGTATTTAGTTCAGAGGTATAAACTTACTAACGCCGATTCTGGCAAAGGCAAGATGATATTGAGTGAGCTGTGTACTGCAGAAATGAGCGACGATGAATCATCGTACACTGGCTTTGGGTCGTTGCACGAAATGATGGAGCCAGAGAGTACGACTAGTGATATCAAAATGGAACCAATGGATGAGGATAATATCAAATTGGAGCCAATGTCTCCatag
- Protein Sequence
- MYQNLLDFFCDYCSRAFTRKYNLQTHIENCHLTASCHCEICNQTFGSPAGLQLHLSRGHNRYGQSSPECDICGNIFTRKQNIISHMTTVHLQGAAQSTRCDLCDKIFTTEWNLKRHMNQFHNPDIQYPTCHDCNKVFKGKHLLIAHIQATHVMEKGIIKCHLCDRVYTNNRNLKRHIEMYHGEKGEFRCDVCPKVYTSNQSLRRHIRTSHYTDDNEEYTCEYCNKVITGRENHNSHVSFFHKPDTNSVDCSDVVSSKHDYICISCSKTFEDEPMLRHHVKTEHSFKSFYTYCKKSLLKQIGRPKNTKMVFYNCEYCINSFGSVYEFKDHMRTNHDKEYSLSTCNVCFNKFYSKESMLNHKKICLPPPNVNPCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNIDDSDSNSYKCKHCDRVYYSDRSLKHHIKLKHTTDEAMECEYCGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFSSKEALTIHLQTKHLAEDEIYKCEVCNLVFKGQEKFEQHNELCHVNVVPNIKQKILPRCIICMKDFSTRKTLKRHIKKFHDEFDVEELANFGSRRRVFNIDCEECVKKFSDDFHFSLYQKLRHLKESVIFKCEICSTSYNSLEYLVQRYKLTNADSGKGKMILSELCTAEMSDDESSYTGFGSLHEMMEPESTTSDIKMEPMDEDNIKLEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279494;
- 90% Identity
- iTF_00075767;
- 80% Identity
- -