Pdes034010.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- -
- Assembly
- GCA_963921415.1
- Location
- OY992874.1:6804464-6806824[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5e-06 0.00051 21.4 3.2 1 23 8 31 8 31 0.95 2 21 0.00023 0.024 16.1 0.3 2 23 37 59 36 59 0.95 3 21 0.00045 0.046 15.2 0.7 2 23 68 90 68 90 0.97 4 21 4.2e-07 4.3e-05 24.8 1.4 2 23 99 121 98 121 0.96 5 21 8.3e-05 0.0085 17.5 0.8 2 23 129 151 129 151 0.93 6 21 1.3e-06 0.00013 23.2 2.2 2 23 159 181 158 181 0.96 7 21 5.8e-07 6e-05 24.3 2.7 1 23 187 210 187 211 0.97 8 21 0.012 1.2 10.7 1.0 1 23 218 241 218 241 0.93 9 21 5.2e-06 0.00054 21.3 0.4 1 23 260 283 260 283 0.97 10 21 7.1e-05 0.0073 17.7 1.1 1 23 311 334 311 334 0.98 11 21 0.45 46 5.8 1.0 2 21 342 361 341 362 0.93 12 21 0.012 1.3 10.7 1.5 3 23 372 393 371 393 0.95 13 21 0.0046 0.47 12.1 4.8 1 23 417 440 417 440 0.97 14 21 1.1e-05 0.0011 20.3 0.6 2 23 447 469 446 469 0.96 15 21 3.4e-05 0.0035 18.8 2.2 2 23 476 498 475 498 0.94 16 21 0.0079 0.81 11.3 2.2 1 23 504 527 504 527 0.97 17 21 0.2 21 6.9 7.1 2 23 535 557 535 557 0.95 18 21 3.5e-05 0.0036 18.7 0.2 1 23 564 587 564 587 0.97 19 21 0.01 1 11.0 2.0 1 22 594 615 594 617 0.90 20 21 0.041 4.2 9.1 2.8 5 23 634 653 631 653 0.90 21 21 2.8 2.9e+02 3.3 0.6 3 15 675 687 674 689 0.87
Sequence Information
- Coding Sequence
- ATGTACCAGAACCTCCTCGACTTCGTCTGCGACTACTGTAGCAGAGCCTTCACTAGAAAATACAATCTTCAGACGCACATAGAGAACTGTCATCTCAGCGCATCTTGTCGCTGTGAAATTTGCGACCAGACCTTTGGAAGCCCTGCCGGCTTACAACTCCACCTCTCCCGTGGTCACAACAGCAATGGCCAGTCGAAACCGGAATGCGACATTTGTGGACACATTTTCTCGCGAAAACAGAAGATCCTATCTCACATGATCACTGTCCACCTTCAAGGGACAGACCTGAGTACCCGATGTCCGCTCTGCAACAAAGTTTTTACCACTGAATGGAATTTAAAGAGGCATATGAAGCAATTTCACAACCCTGATGTACAGTACCCAACATGTAACAATTGTAACAAAGTGTTCAAAGGCAAACACTCTTTGATTGCCCATATTGAAGCAATGCACGGTTCTGACAAAGGCATCATCAAGTGCCACCTCTGTGATAAAGtttacacaaataatagaaatttgAAAAGACATATTGAAATGTATCATGGGGAAAAAGGAGAGTTTAGGTGCGATGTATGCCCCAAAGTGTATACGTCTAACCAGAGCTTGAGGAGACACATCAGAACCAGGCATCACTCTGAAGATGACGAAGAGTATACGTGTGAATATTGCAGCAAAGTCCTGACTGGTATCGAGAACTATAAGAGCCACATTACGTTCTTTCACAAACATGATAACTCTGTTGACTGCAGTGACGCTGTATCCACAAAGACTCACAATTTCATTTGCGTCGACTGCACAAAAACTTTCGAAGATGAATCGCTGCTACGTCGCCATGTGAAGACTGAGCACTCGTTTAAAACATTCTATAAGTACTGCAAGAAATCACTGCTGAAGCAAATGGGTAGACCGAAAAGCGAAAAACTTGTGTTCTACAAATGCGAATACTGTAACAACTCATTTGGAAGCGTTTACGAGTTCAAAGACCATATGAGAGTCAACCATGACAAGGAATACTCGCTTTCCACGTGCAATGTTTGTTTCAATAGGTTTTACAGCAAGGAATCTATGTCGCAACACAAAAAGATATGCTTACCACCACCCAACGTGAACCCATGCAGTCATTGTGATAAGCTCTTCACAGATATATCCAGTTTAGAATTCCACACGAggatatttcaccctcaagctCAAATAGCCGACTCGAATATAACTTCGACAAACATCGACGATTCTCTAGAGACCACTTCGTACAAATGCAAGTTCTGCGATCGAATATATTACAGCGATCGATCGTTGAAACAccacataaaattaaaacatacgaCAGACGAAGCGATGGAGTGCGAGTATTGTGGTAAAATTTGCAGCAACAAGTATTATTTGGCATCGCACATCAAGATCGTTCACAACAATGATTCCTGGTCGAAATGCGACTACTGCGATAAACAGTTCAAGTCTAAAAGGAACATTCGTCGACACATTGAGTATACGCATTTGGGAATGCAACGGTATAAGTGTATCGAGTGTGAAACTCTTTTTAAAGAGAAGAGAAGTCTCAGGAAGCATGTCCGAACGAAGCATCCCAATTCAGCTATGTTTCCACAATGTCACATTTGCCACAAGAGATTCGAGTCGGCGAAATCTTGTAAGATACATCTGAAACTGCTACACTCGTTCAACATGAACACGTTTCCTTGTGATCTCTGCTCTGTTTCGTTCAGCTCAAAAGAAGCGTTGACGATACATTTGCAAACGAAGCATCTGGCAGAAGACGAGATTTACAAGTGCGAAGTGTGCAACTTGGTATTCAAGGGGCAGGAAAAGTTTGAGCAGCACAATGAGTTGTGCCATGTCAATGTCGTTCCTAATTTAAAGGAGAAGGTGTTGCCGCGCTGCATTTTGTGTATGAAAGATTTCAGCACCAGGAAGACGCTCAAAAGACACATCAAGAAGTTCCACGACGAATTCGAAGTGGATGAACTGGCAAACTTTGGGACACGGCGTCGCGAGTTCAGCGTGGATTGCGACGAGTGTGTGAAGAAGTTTAGCGATGATTACCATTTTGGTCTGTATCAGAGGTTGAGGCATTTAAAAGAGTCTGTCATTTTTAAATGCGAAGTATGTTCCGCTGCGTACAACGCTTTGGAGTATTCGATACAGAGATACAGGTTGAACGACGATACAGGCAAAGGGAAGATGATTTTGAGTGAGCTCTGTACGGCTGAGATGAGTGATGGGGAATCTTCGTATACTGGTTTTGGGTCTTTGCACGAAATGATGGAACCGGAGAGCACGACGAGCGATATTAAAATGGAACCGTTGGACGAGGGTGTGGTCAAGCAAGAGCCGATGTCTCCCTAA
- Protein Sequence
- MYQNLLDFVCDYCSRAFTRKYNLQTHIENCHLSASCRCEICDQTFGSPAGLQLHLSRGHNSNGQSKPECDICGHIFSRKQKILSHMITVHLQGTDLSTRCPLCNKVFTTEWNLKRHMKQFHNPDVQYPTCNNCNKVFKGKHSLIAHIEAMHGSDKGIIKCHLCDKVYTNNRNLKRHIEMYHGEKGEFRCDVCPKVYTSNQSLRRHIRTRHHSEDDEEYTCEYCSKVLTGIENYKSHITFFHKHDNSVDCSDAVSTKTHNFICVDCTKTFEDESLLRRHVKTEHSFKTFYKYCKKSLLKQMGRPKSEKLVFYKCEYCNNSFGSVYEFKDHMRVNHDKEYSLSTCNVCFNRFYSKESMSQHKKICLPPPNVNPCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNIDDSLETTSYKCKFCDRIYYSDRSLKHHIKLKHTTDEAMECEYCGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAMFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFSSKEALTIHLQTKHLAEDEIYKCEVCNLVFKGQEKFEQHNELCHVNVVPNLKEKVLPRCILCMKDFSTRKTLKRHIKKFHDEFEVDELANFGTRRREFSVDCDECVKKFSDDYHFGLYQRLRHLKESVIFKCEVCSAAYNALEYSIQRYRLNDDTGKGKMILSELCTAEMSDGESSYTGFGSLHEMMEPESTTSDIKMEPLDEGVVKQEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01279494;
- 90% Identity
- iTF_01280607;
- 80% Identity
- iTF_01280607;