Pful015032.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004619.1:45427798-45429066[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0022 15 6.7 0.0 27 50 112 135 109 139 0.87 2 8 0.0057 39 5.4 0.2 27 49 144 166 141 171 0.89 3 8 0.022 1.5e+02 3.5 0.0 26 49 175 198 168 203 0.85 4 8 0.0065 44 5.2 0.1 27 49 208 230 205 233 0.89 5 8 0.02 1.4e+02 3.6 0.1 27 48 272 293 246 299 0.89 6 8 0.16 1.1e+03 0.7 0.0 27 44 304 321 302 328 0.85 7 8 0.0013 9 7.4 0.2 26 48 334 356 326 360 0.90 8 8 0.0094 64 4.7 0.1 27 49 399 421 395 422 0.89
Sequence Information
- Coding Sequence
- ATGGCAGCCCCAACATTCGGAGACACCATCCACAATGAAATCAAAGAGATAATTATTAAGGAAGAACCCAAAGAAGAATCGAGCGACACAGAAGTAAATAATGACGAAGAAGACACTGTCTTAAGAGTTAAAGAAGAAATTGACATCGAATCGAATGAGTTAAAAGAAGAAAATGACCAAACAGAAGAAATCTTTGCATTACATAACAAAAAAGGTAAATGGTTCCGGTGTGAAAAATGTGACTACAAAACTAAGCACAAACATAACCTACAACTGCACGTGATGGGTAACCATGGTAAACATCTACCAGAAGAGAAGATTAAATGGTTTcgttgcgagaaatgcgaccacaaaaccaaacaaaagaATAACCTCAAGCAGCACATGGTTATGAGACATTTAAGCGAAGATGAGATCAATTGGTTCCACTGTGAGAAATGTGACTGCAGATTCAAGCAGAACAAAGACCTGAAACGTCACATCGTTATGAAACACGCAAATGAAGACGAGATTCAGTGGTtccagtgcgaaaaatgcgactacaaaaccaaacaaaaaagcaaccttaaacagcacATGATCGTGAAACATTTAAATGAAAATGAGATCAATTGGTTCCACTGTGACGAATGTGACTGCAAATTCAAACAGAACAAGGACCTGAAACGGCACATATTTATGAAACATGTGAAGGAAGTCAAAATCCAGTGGAtccagtgcgagaaatgcgacttcaAAACCAAACAAAAGCAACACCTGCAAGGGCACATGATTaacaaacacctaaatgaagacgaGGTcaagtggtttaagtgcgagaaatgcgaccacAAAACTAAACAAAAGAGTAACCTCAAGCAGCACGTGATTCTTAAGCATCCAATTGAAGACGAGGTCAACTGGTTTCAGTGCGAGGTGTGCGACTATAAAACAAAAGCGAAGCGGAACCTCAAAGCGCACATGACTAAACATCTCGGTGCTAGTGAGATTAAATGGTTTGCATGTGAGAAGTGTTATTACAGGTCGAAGGTGAGCAAGGATCTGAGGCGACACAccgtttttaaacatcaaaATGAAGGCGAGATAAATTTGCTCAAGTGCGGAAAGTGCGAGTACAAAACTAAGTACAGTAGTATCCTGAAGCAGCACGTGATTGGTGAACATTTCGATGCAAGGGAGGTTAAGTGGTTTCATTGTGAAAAATGTAGCTACAAAGCTAGGCAAAAGAGTGATCTGAAACGTCACGTGattaataaacattttaaatag
- Protein Sequence
- MAAPTFGDTIHNEIKEIIIKEEPKEESSDTEVNNDEEDTVLRVKEEIDIESNELKEENDQTEEIFALHNKKGKWFRCEKCDYKTKHKHNLQLHVMGNHGKHLPEEKIKWFRCEKCDHKTKQKNNLKQHMVMRHLSEDEINWFHCEKCDCRFKQNKDLKRHIVMKHANEDEIQWFQCEKCDYKTKQKSNLKQHMIVKHLNENEINWFHCDECDCKFKQNKDLKRHIFMKHVKEVKIQWIQCEKCDFKTKQKQHLQGHMINKHLNEDEVKWFKCEKCDHKTKQKSNLKQHVILKHPIEDEVNWFQCEVCDYKTKAKRNLKAHMTKHLGASEIKWFACEKCYYRSKVSKDLRRHTVFKHQNEGEINLLKCGKCEYKTKYSSILKQHVIGEHFDAREVKWFHCEKCSYKARQKSDLKRHVINKHFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01278443;
- 90% Identity
- iTF_01278443;
- 80% Identity
- iTF_01278443;