Pful015032.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pycnomerus fuliginosus
Gene Symbol
-
Assembly
GCA_963924575.1
Location
OZ004619.1:45427798-45429066[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0013 0.078 14.4 5.1 1 23 75 98 75 98 0.94
2 11 0.00025 0.015 16.6 4.6 1 23 110 133 110 133 0.96
3 11 0.00032 0.019 16.3 6.5 1 23 142 165 142 165 0.95
4 11 2.6e-06 0.00015 22.9 2.4 1 23 174 197 174 197 0.97
5 11 0.00037 0.021 16.1 6.9 1 23 206 229 206 229 0.95
6 11 0.0036 0.21 13.0 2.9 2 23 239 261 238 261 0.95
7 11 0.00019 0.011 17.0 4.1 1 23 270 293 270 293 0.94
8 11 7.1e-05 0.0042 18.4 1.5 1 23 302 324 302 324 0.98
9 11 0.12 7.1 8.2 2.1 1 21 333 353 333 356 0.89
10 11 0.42 25 6.5 0.4 2 23 366 388 365 388 0.90
11 11 0.0043 0.25 12.7 3.4 1 23 397 420 397 420 0.94

Sequence Information

Coding Sequence
ATGGCAGCCCCAACATTCGGAGACACCATCCACAATGAAATCAAAGAGATAATTATTAAGGAAGAACCCAAAGAAGAATCGAGCGACACAGAAGTAAATAATGACGAAGAAGACACTGTCTTAAGAGTTAAAGAAGAAATTGACATCGAATCGAATGAGTTAAAAGAAGAAAATGACCAAACAGAAGAAATCTTTGCATTACATAACAAAAAAGGTAAATGGTTCCGGTGTGAAAAATGTGACTACAAAACTAAGCACAAACATAACCTACAACTGCACGTGATGGGTAACCATGGTAAACATCTACCAGAAGAGAAGATTAAATGGTTTcgttgcgagaaatgcgaccacaaaaccaaacaaaagaATAACCTCAAGCAGCACATGGTTATGAGACATTTAAGCGAAGATGAGATCAATTGGTTCCACTGTGAGAAATGTGACTGCAGATTCAAGCAGAACAAAGACCTGAAACGTCACATCGTTATGAAACACGCAAATGAAGACGAGATTCAGTGGTtccagtgcgaaaaatgcgactacaaaaccaaacaaaaaagcaaccttaaacagcacATGATCGTGAAACATTTAAATGAAAATGAGATCAATTGGTTCCACTGTGACGAATGTGACTGCAAATTCAAACAGAACAAGGACCTGAAACGGCACATATTTATGAAACATGTGAAGGAAGTCAAAATCCAGTGGAtccagtgcgagaaatgcgacttcaAAACCAAACAAAAGCAACACCTGCAAGGGCACATGATTaacaaacacctaaatgaagacgaGGTcaagtggtttaagtgcgagaaatgcgaccacAAAACTAAACAAAAGAGTAACCTCAAGCAGCACGTGATTCTTAAGCATCCAATTGAAGACGAGGTCAACTGGTTTCAGTGCGAGGTGTGCGACTATAAAACAAAAGCGAAGCGGAACCTCAAAGCGCACATGACTAAACATCTCGGTGCTAGTGAGATTAAATGGTTTGCATGTGAGAAGTGTTATTACAGGTCGAAGGTGAGCAAGGATCTGAGGCGACACAccgtttttaaacatcaaaATGAAGGCGAGATAAATTTGCTCAAGTGCGGAAAGTGCGAGTACAAAACTAAGTACAGTAGTATCCTGAAGCAGCACGTGATTGGTGAACATTTCGATGCAAGGGAGGTTAAGTGGTTTCATTGTGAAAAATGTAGCTACAAAGCTAGGCAAAAGAGTGATCTGAAACGTCACGTGattaataaacattttaaatag
Protein Sequence
MAAPTFGDTIHNEIKEIIIKEEPKEESSDTEVNNDEEDTVLRVKEEIDIESNELKEENDQTEEIFALHNKKGKWFRCEKCDYKTKHKHNLQLHVMGNHGKHLPEEKIKWFRCEKCDHKTKQKNNLKQHMVMRHLSEDEINWFHCEKCDCRFKQNKDLKRHIVMKHANEDEIQWFQCEKCDYKTKQKSNLKQHMIVKHLNENEINWFHCDECDCKFKQNKDLKRHIFMKHVKEVKIQWIQCEKCDFKTKQKQHLQGHMINKHLNEDEVKWFKCEKCDHKTKQKSNLKQHVILKHPIEDEVNWFQCEVCDYKTKAKRNLKAHMTKHLGASEIKWFACEKCYYRSKVSKDLRRHTVFKHQNEGEINLLKCGKCEYKTKYSSILKQHVIGEHFDAREVKWFHCEKCSYKARQKSDLKRHVINKHFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01278937;
90% Identity
iTF_01278937;
80% Identity
iTF_01278937;