Palb002188.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- sip1_1
- Assembly
- GCA_961205885.1
- Location
- OY540801.1:25908232-25910804[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-91 6.7e-88 294.5 12.5 1 275 396 662 396 662 0.98 2 2 0.038 1.8e+02 1.2 0.0 245 270 677 702 668 732 0.83
Sequence Information
- Coding Sequence
- ATGTCTGATAATGAATATGAACGGTTTGAAATAACAGATTATGATTTAGATAATGAATTTAATCCAAATCGAAACAGAAGACgaccaacaaaaaatcaacaaatatacggtaTATGGGCCGACAGTGACAGCGATAATGATAATTCTGATAACTTTACGTCAAAAAATAGGAGAGGAGGTAAAAAGCCCAAAGATTATACAGCTCCTGTTAGTTTTGTTGCTGGAGGAGTGCAACAGTATGGCAAAAATGAtgagaagaaattaaaatcaagCCCAAATACATCTGATGAAGTGGATGAAGTAAGGCCAAGGTTCTCTGCATATGAAGGTGACGGCAATAATTCCAGTGAATCTGATAGTGAAGTTGAAACAAAACCTAAATTATCATCTACCGCTGGATTCCGCCAAATgccaaacaaaaatcaactaTCGGGTAATATGGGCAATTGGGAAGCACATACAAAAGGCATTGGTGCCAAGTTGCTCCTTCAAATGGGATATAAACCTGGTAAAGGTCTTGGAAAATCATTACAAGGTATTGCAACACCTGTTCAAGCTGCGGTTAGAAAAGGTCGAGGTGCCATTGGAGCATATGGCCCCGAAATGAAACAAACTCTTGCTGATCAAAAATCTGCTGCAAAAGCCATTGACGAAGATGAAAAAGAAACCAaagattttaaagaaaaaatgcaaCAATTACGTGGAGAAACATATAGTACTTCTAAAGTTAAAAAAcagcgatattattataaaagtataCAAGATGTTAttgaaaaaggcaaaaaaccAGGGTTTGTTTTTCAAGAGAGAGCAAATAGTAAGTTAGCTAATGTAACGGTAATTGATATGACCGGTCCAGAAAAAAGAGTATTGAGCGGTTATCATGCATTAGGCCAAACAAAAGTTGCTGATGAATCTTTATACGAACATCGACCTACTAAAAAGTGTACAAATTTTGCGTTACCAGAATTAATgcataatttgaatttaattgttgaTATGTGTGAACAAGAAATTATCTTAATTGATAAAACTCAACGTTCAAATAAAGACCGACAAGTCGTGTTAGAACaagaaaaagataattttagtaaaattgTTGAGTTGGAGCATAATCATATTCTTACTTTAGAGTTGGCCTTAGaattagtaaataaacttACTAATACAATCAGTCCAGTTGAATTAGAAAAAGCAgaagatatttttattgaattgcaAGCTAATTATCCAGGAGAATATAAAGAATTTGGCTTAGGTGACTTGGCTCCTGGTATTATTGCACCACttttcaatacaaaattaatggaATGGAACGCTTTACAAGAACCGACTAAACATGTGGATCTATTGAAAAAATGGAAAACTATTTTAGGAATGAATCAGTCATCAACAGTTAACATTTTCGATCCTTATTCGGCGCTTGTTTGGCTAGGAATTATTCCAAGCTTTCGTCGTGCGGCTGCATTGTGGGATCCACGTTCTCATCAATCCATGGCTGCTTTATTAGATACTTGGGCTCCTCTTTTACCAAATAATGTATTAGATAATGTACTCGAGCAGATAATTTTACCACGAATACATGCCAGTGTCATTCAGTGGGACCCATTGACAGATACAATACCAATTCATGTGTGGATTCATCCCTGGAAAGGATTGCTAGATCATAAAATGGATgaGTCTGTATATCCTTTAATAAGAGATAAATTAGGACATGCATTAAAAACTTGGACGCCATCTGATCGGTCAGCACGGGCTATGATAACACCATGGAGAAATGTATTTGCTAATGGTGACATGCAAGCTTTTCTCATAAAGCATGTCATTCCAAAATTACAAATGACATTATccgaattaattataaatccaTTGCAACAAGATTTAGAATTATGGAATCAAGTATGGGAGTGGCATGAAGTAATACCAGTTTTAAATATGACACAATTATTGGATAAATTCTTCTTCCCGAAGTGGATTCAAACATTAGTTATTTGGTTAAATCAAGCACCAAACTTTGATCAAGTATCACGATGGTATTCTGGATGGAAAGGTTTATTTTCTGATGaaattttacaacaaattCCAATTAAAGAACATTTTAGACGTGCATTAGAATTAATGCATCGATCTACCGGCGCTGTGACCATTTTATCGGTGGAAACACAAACTGTTGTAATGCCGCCGCAAACCTCAAGTATACTCGATATGCAAATGCAAGCATTGCCTGCATTGGAGTTCAAGGAACTTGTATCACAAAAATGTGCAGAGCGTGGTATTATATTTGCCCCTATGCCTGGTAGAAGGGAAACTGGTAAACAAGTATATCGcgttggaaaattattttgttacattgatcGATCAGTTATTATGTTAAGTGATGGCAGTTTATCTAGTTGGCAACCAGTGCCATTgacattattattagaaaaagctATAACtggttaa
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNPNRNRRRPTKNQQIYGIWADSDSDNDNSDNFTSKNRRGGKKPKDYTAPVSFVAGGVQQYGKNDEKKLKSSPNTSDEVDEVRPRFSAYEGDGNNSSESDSEVETKPKLSSTAGFRQMPNKNQLSGNMGNWEAHTKGIGAKLLLQMGYKPGKGLGKSLQGIATPVQAAVRKGRGAIGAYGPEMKQTLADQKSAAKAIDEDEKETKDFKEKMQQLRGETYSTSKVKKQRYYYKSIQDVIEKGKKPGFVFQERANSKLANVTVIDMTGPEKRVLSGYHALGQTKVADESLYEHRPTKKCTNFALPELMHNLNLIVDMCEQEIILIDKTQRSNKDRQVVLEQEKDNFSKIVELEHNHILTLELALELVNKLTNTISPVELEKAEDIFIELQANYPGEYKEFGLGDLAPGIIAPLFNTKLMEWNALQEPTKHVDLLKKWKTILGMNQSSTVNIFDPYSALVWLGIIPSFRRAAALWDPRSHQSMAALLDTWAPLLPNNVLDNVLEQIILPRIHASVIQWDPLTDTIPIHVWIHPWKGLLDHKMDESVYPLIRDKLGHALKTWTPSDRSARAMITPWRNVFANGDMQAFLIKHVIPKLQMTLSELIINPLQQDLELWNQVWEWHEVIPVLNMTQLLDKFFFPKWIQTLVIWLNQAPNFDQVSRWYSGWKGLFSDEILQQIPIKEHFRRALELMHRSTGAVTILSVETQTVVMPPQTSSILDMQMQALPALEFKELVSQKCAERGIIFAPMPGRRETGKQVYRVGKLFCYIDRSVIMLSDGSLSSWQPVPLTLLLEKAITG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276948;
- 90% Identity
- iTF_01276948;
- 80% Identity
- -