Pnig041749.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pterostichus niger
Gene Symbol
SCRT1
Assembly
GCA_947425015.1
Location
OX380342.1:35512106-35519131[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00088 0.13 14.3 0.2 1 23 350 372 350 372 0.95
2 12 4.7e-05 0.0066 18.3 1.6 1 23 380 402 380 402 0.99
3 12 8.3e-06 0.0012 20.7 0.4 2 23 410 431 409 431 0.97
4 12 8.2e-06 0.0012 20.7 1.5 1 23 437 459 437 459 0.99
5 12 3.5e-05 0.005 18.7 3.6 1 23 466 488 466 488 0.99
6 12 8.7e-06 0.0012 20.6 0.5 1 23 494 516 494 516 0.96
7 12 9.2e-06 0.0013 20.6 0.1 1 23 522 544 522 544 0.98
8 12 1.2e-06 0.00017 23.4 1.2 1 23 550 573 550 573 0.96
9 12 9.3e-05 0.013 17.4 0.7 1 23 579 602 579 602 0.96
10 12 1.1e-05 0.0015 20.4 2.7 1 23 608 630 608 630 0.99
11 12 0.00018 0.025 16.5 0.4 1 23 636 658 636 658 0.94
12 12 0.00048 0.067 15.2 0.1 1 23 664 688 664 688 0.94

Sequence Information

Coding Sequence
ATGACTTCAGCATCTATAGAGGTGAGGTCTAATCCTCATTGCCTCGTATGTAATAGTCGTGTGAGTGTATCTACTAGAAATTCTTATCAAATATTTAATAACCAAGTGCAAACATGCTCCGAAAGGCCAGTAAATTGTATCATGTCAAGTGTTCTTGGCAAAGATCTATCAGAAATAAATGTACATTCACTAATCATTTGCAAAAAGTGTTTCAAATTGTTCAACGAAGTGGACGAGTTAGAAATGAGATTAGCAGAGATAAAAGTTGAAATAGTTGGAAACTATAAACGATCTATCCAGAAGTACAAGAAAAATGGTGATGCACTTATATCTATTGATATTGATGATATTAAGGATGAAGAAGTTGAGGATGGAACTAAAATGATAAAGATTCACAAAAACATGCAGAAAGAAATAAAGAAGAAAATACTAGATATCCCATCATCGGACGATGAACAACAAGATGCAGATAAAGTAGTACTTTTAGAAGACATAGAAACCCAACTTGCAAGATTGCACAAAGAAGACAAAACAGATGACGATGAAGAGAAAATGGATACATCAAACAACGAGGAAATGATAGAGATTCATATCGAACACGAGTCTGCTGGTTCGTTCCAAGGTTTCGAAGTTCAAGAAGTGCAGGCTGAAGAAACAATTGACGCTGGTGCCATTGACAATTCGGAAGATTCAGATTATGAACCTCCAGACGGGGAAATACACAATGGACAAGAAGGTGACAACACCGCAGCTTTACTTGAAGCTGCTGCCTTAGCCGAACAAACGCTCAATGAAGACGGGACTGAAATGATAACAATAAAAATGGAACCTGGTTTAGAAGACACACACAAAATTGACAGGAGAAGAATTCCGCAAATATCTCGAAAAGCTGCCAAAAATAAAATTATTAAAGAAGAATTCATAGAACCAATTGTAAGCCGGGATGGCAACATCTACACCTGCCTAGCGTGCGACGGTGACGAGAAATTCTCCGGTGAACCTAAAGCTGTCATGCTTCATGTGAAGAATGACCACGAGCTTCGCGTTTACATCTGCGACGTGTGTGGCCAGGACTTCCGCAAACGCAACGAGCTCAGTATGCATCTGGACGAACACGTCGCCACCGAGGAAGGCGACTTCCAGTGCGAGGTGTGCAATAGGATCTTCAGCAATCTCCGTCTGTTCCGGATACACAAGAGGATGCATTATCCGCAGTCCAAGTTGTGGACTTGTGAGACATGTGGAAAGAGATACAGCTCTCGCAACCTGCTGGAAGAAcacatcaacacccacaccgggctccgcccctacgtgtgcaagacctgcggtaaggactttgcaagcaagtacacttacaaggcgcacgagaagacgcacgaggtccgtccacggccgttccaatgctcgcattgccctaagtcgttcttgtctcaacagaacctcacgcagcacgagcgcacgcattcgggaatcaaggagtatgtgtgccacctctgcggcaaggccttcgggagtccgcataacctggaggtgcattctatagtccacacagggtacaagccgtatatctgcgggatctgtgggaaagcgttcgcgaggaaggcggagattcgcgaccatgagcgcacacatactggtgagcgcccttaccagtgcgaattttgtggggcaaccttcagccaacgcagtaatctccagtctcacaagcgcgccactcactacgacgacaagcgctacaaatgccaggcgtgtggcaaaggcttcaaacggcgtcgtctcctagactaccatatgaaggcagcgcacactggtgagcgtccattcaaatgtacggtctgcgacgccacgttcgtgtaccccgagcacttcaagaaacatcgcaggattcatacgggcgagaaaccgttcctctgcgaagtttgtggcaaagctttcaacagcagggataaccggaatgcacacagATtcgtccacagcgacaagaaaccctacgaatgtctggtttgcggaatgggcttcatgcgtaaaccacttctctatgctcacatgcaaaccCAGGGTCATCTCAACGATACCATCGTCGTGAATCAACCTCGGCTCACCACCGACGATGACCAGATTGTCACCGTGAACGTGAATGGCGAGATGGAGTTAGTGGAGCACGAGGTCAGCAGGCTAGAGCACATTGGCAGCGAAGCAGAGGATGGTGATGCCAGCGAAGACACCAAACTCTACATCGCCGAGCTGAAAGAACATGTCATCATCCAAGATAGTGACATCTATGGGAATAGTAAAGGAGCGATGATTGTTGGAGAACCCATTGATGGGGAATCTGAATCCGCGGTACAGGATGCGGTCAAACATTTGATTATTGACGGACAGGAAGTACAATTCGCCGAAGGTGATGACGACGACTCGGAAGAGCACCACGTGCTCACAACACAAACTATATTAAACGAGAATGGAGAATACGAGGAAGTAGTGACGGCAGACGGACTCGTCGAAGGAGACACCCAAACCATTGAAACCTCTCAGGGTCCTGTTCAGCTTGTGCGCATTCGAATACCTTCTGCCGACGGTGAGGAAGAAGATGCCTGGGTCAAAATCGTACCCGAATAA
Protein Sequence
MTSASIEVRSNPHCLVCNSRVSVSTRNSYQIFNNQVQTCSERPVNCIMSSVLGKDLSEINVHSLIICKKCFKLFNEVDELEMRLAEIKVEIVGNYKRSIQKYKKNGDALISIDIDDIKDEEVEDGTKMIKIHKNMQKEIKKKILDIPSSDDEQQDADKVVLLEDIETQLARLHKEDKTDDDEEKMDTSNNEEMIEIHIEHESAGSFQGFEVQEVQAEETIDAGAIDNSEDSDYEPPDGEIHNGQEGDNTAALLEAAALAEQTLNEDGTEMITIKMEPGLEDTHKIDRRRIPQISRKAAKNKIIKEEFIEPIVSRDGNIYTCLACDGDEKFSGEPKAVMLHVKNDHELRVYICDVCGQDFRKRNELSMHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKLWTCETCGKRYSSRNLLEEHINTHTGLRPYVCKTCGKDFASKYTYKAHEKTHEVRPRPFQCSHCPKSFLSQQNLTQHERTHSGIKEYVCHLCGKAFGSPHNLEVHSIVHTGYKPYICGICGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCQACGKGFKRRRLLDYHMKAAHTGERPFKCTVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTDDDQIVTVNVNGEMELVEHEVSRLEHIGSEAEDGDASEDTKLYIAELKEHVIIQDSDIYGNSKGAMIVGEPIDGESESAVQDAVKHLIIDGQEVQFAEGDDDDSEEHHVLTTQTILNENGEYEEVVTADGLVEGDTQTIETSQGPVQLVRIRIPSADGEEEDAWVKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01226037; iTF_00769018; iTF_01229919; iTF_00029541; iTF_00767429; iTF_00470168;
90% Identity
iTF_01226037;
80% Identity
-