Hrub024637.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rubripes
Gene Symbol
SCRT1
Assembly
GCA_963082715.1
Location
OY720452.1:5639694-5659211[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00085 0.22 14.3 0.2 1 23 351 373 351 373 0.95
2 12 4.5e-05 0.011 18.3 1.6 1 23 381 403 381 403 0.99
3 12 8e-06 0.002 20.7 0.4 2 23 411 432 410 432 0.97
4 12 2.2e-06 0.00055 22.5 1.0 1 23 438 460 438 460 0.99
5 12 2.7e-05 0.0069 19.0 4.1 1 23 467 489 467 489 0.99
6 12 6.3e-06 0.0016 21.0 0.5 1 23 495 517 495 517 0.96
7 12 8.9e-06 0.0022 20.6 0.1 1 23 523 545 523 545 0.98
8 12 1.1e-06 0.00029 23.4 1.2 1 23 551 574 551 574 0.96
9 12 9e-05 0.023 17.4 0.7 1 23 580 603 580 603 0.96
10 12 1e-05 0.0026 20.4 2.7 1 23 609 631 609 631 0.99
11 12 0.00017 0.044 16.5 0.4 1 23 637 659 637 659 0.94
12 12 0.00093 0.24 14.2 0.1 1 23 665 689 665 689 0.92

Sequence Information

Coding Sequence
ATGACTACTTCTATAGAAGTGAGGTCAAATCCTCACTGTCTTGTATGCAATAGCCGTGTAAGTGTATCTACAAGGAATTCTTATCAAATATTTAGTAACCAAGTGCAAACATGCTCCGAGAGGCCAGTGAATTGTATTATGTCAAGTGTTCTTGGCAAAGATTTATCAGAAACAAATGTGCATTCGTTaatcatttgcaaaaagtgTTTCAAATTGTTCAACGAGGTGGACGAGTTAGAAATGAGGTTAGCCGAGATAAAGGTTGAACTATTAGGAAACTACAAAAGATCTATCCAAAGATATCAGAAAAATGGTGATACAATTATTCCAATTGACTTTGACGATATAAAAGAAGAAGTTTTAGAAGATGGTACAAAAATAATACACCTTGACAGcacacaaaagaaaaaaatattagatattcCGTCATCTGATGAAGAACAACATGAACAGGAACAGGACTCAAACGAAAAAGTAGTCCTCCTCGAAGACATAGAAACCCAGCTCGCCCGTCTTCACAAAGAAGACCCCAAACCTGACGACGAGAAAATCGATTCTCACAATGAAGAACTCATCGAGATCCACATTGAACAGGAATCAGCTGGTTCATTCCAAGGCTTTGAAGTACAGGAAGTACAAGCTGAAGAAACGATCGATGCAGGGGCCATCGATAATTCCGATGACTCGGATTACGAACCAGACATGCAAAACGGGCAAGATGGAGACAACACGAATGCTTTGCTTGAAGCAGCCGCGTTAGCAGAACAGGGACTGACCGAGGATGGTGAGTACATACATGATTCTGGAATgataacaattaaaatggaacCAGGATTAGATGATGCCCATAAAATTGAGAAAAGAAGATTCTCGCAAGTTAATAAAAAGTTTCATAAACCTTCCAAACCCATTAAAGAAGAATATTTGGAACCGATTGTAAGTCGCGATGGCAACATCTACACCTGCCTGGCCTGTGATACCGACGAAAAATTCTCTGGCGAGCCAAAGGCAATCATGCTTCACGTAAAGAACGAACACGAACTTCGAGTGTACATTTGCGATGTTTGCGGGCAAGATTTCCGCAAGCGAAATGAGCTGAGTATGCATTTGGACGAACACGTCGCCACAGAAGAAGGTGATTTCCAGTGCGAGGTCTGCAATCGTATTTTCAGCAACCTACGCCTGTTTAGAATACATAAGAGGATGCACTATCCGCAGTCGAAGTTGTGGACGTGTGAAACTTGCGGAAAGCGATACAGCTCTCGCAACCTCCTGGAAGAACACATCAACACCCACACCGGCCTCCGCCCTTACGTCTGCAAAATCTGCGGCAAAGACTTCGCCAGCAAGTATACCTACAAGGCCCACGAAAAGACACACGAGGTTCGGCCGCGACCCTACAAGTGTACGCACTGCCCCAAATCTTTCCTGTCGCAGCAGAACCTCACACAACACGAACGCACGCACTCAGGCATCAAAGAGTACGTTTGTCATCTCTGTGGAAAGGCATTCGGGAATCCACATAACCTAGAAGTGCATAGTATAGTGCACACTGGGTACAAACCGTATATTTGTGGGATTTGTGGCAAGGCGTTTGCGAGGAAAGCGGAGATTAGGGATCACGAAAGAACGCACACAGGGGAACGTCCATACCAGTGCGAATTCTGCGGCGCCACATTCTCCCAACGTAGCAATTTACAATCCCACAAACGGGCAACACATTACGATGACAAACGCTACAAATGCCAGGCTTGTGGCAAGGGATTCAAGCGACGCCGTCTGCTAGACTACCATATGAAAGCGGCACACACGGGCGAGCGTCCGTTCAAGTGCACTGTATGCGACGCCACGTTTGTTTATCCCGAACACTTCAAGAAGCACCGAAGGATTCATACAGGAGAGAAACCGTTCTTGTGTGAGGTGTGTGGGAAGGCGTTCAATAGCAGGGATAACAGAAATGCGCATAgATTTGTTCACAGCGACAAAAAACCCTACGAATGTCTAGTTTGCGGGATGGGTTTCATGCGCAAACCTTTACTCTACGCTCACATGCAATCCCAAGGTCATTTAAACGACACCATCGTCGTCAACCAGCCTCGTCTCACTACCGACGACGACCAAATTGTCACCGTCAATATGAACGGCGAAATGGAGCTGGTGGAGCATGAGGTCGGCCGTTTGGAGCACATTGGCTCCGAGGCCGAAGATGGGGATGCTAGTGAAGATACGAAGCTGTATATAGCGGAACTGAAAGAGCATGTTATTATACAAGATAGTGATCTGTATGGGAATAGCAAAGGGGCGATGATTGTAGGCGAGCCCCTGGATGGAGATACAGAGGAAGCGGTCCAGGATGCAGTCAAACATTTGATCATTGATGGACAGGAAGTACAATTCACCGGCGGCGACGATGATTCTGAAGAGCACCACGTGCTCACCACCCAAACAATCGTGAACGAAAACGGAGAGTACGAGGAGATTGTGACCACAGACGAGCTCGTTGAAGGAGACACCCAAACAATCCAGACATCCTCTGGACCAGTCCAGCTGGTCCGAATTCGAATACCCAACGGAGACGGAGAAGAGGAAGACGCTTGGGTTAAAATCGTACCCGAGTAA
Protein Sequence
MTTSIEVRSNPHCLVCNSRVSVSTRNSYQIFSNQVQTCSERPVNCIMSSVLGKDLSETNVHSLIICKKCFKLFNEVDELEMRLAEIKVELLGNYKRSIQRYQKNGDTIIPIDFDDIKEEVLEDGTKIIHLDSTQKKKILDIPSSDEEQHEQEQDSNEKVVLLEDIETQLARLHKEDPKPDDEKIDSHNEELIEIHIEQESAGSFQGFEVQEVQAEETIDAGAIDNSDDSDYEPDMQNGQDGDNTNALLEAAALAEQGLTEDGEYIHDSGMITIKMEPGLDDAHKIEKRRFSQVNKKFHKPSKPIKEEYLEPIVSRDGNIYTCLACDTDEKFSGEPKAIMLHVKNEHELRVYICDVCGQDFRKRNELSMHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKLWTCETCGKRYSSRNLLEEHINTHTGLRPYVCKICGKDFASKYTYKAHEKTHEVRPRPYKCTHCPKSFLSQQNLTQHERTHSGIKEYVCHLCGKAFGNPHNLEVHSIVHTGYKPYICGICGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCQACGKGFKRRRLLDYHMKAAHTGERPFKCTVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYAHMQSQGHLNDTIVVNQPRLTTDDDQIVTVNMNGEMELVEHEVGRLEHIGSEAEDGDASEDTKLYIAELKEHVIIQDSDLYGNSKGAMIVGEPLDGDTEEAVQDAVKHLIIDGQEVQFTGGDDDSEEHHVLTTQTIVNENGEYEEIVTTDELVEGDTQTIQTSSGPVQLVRIRIPNGDGEEEDAWVKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01275586;
90% Identity
iTF_00769018;
80% Identity
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