Pcup050178.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
SCRT1
Assembly
GCA_963942605.1
Location
OZ012731.1:7673391-7684426[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00068 0.13 14.3 0.2 1 23 348 370 348 370 0.95
2 12 3.6e-05 0.0068 18.4 1.6 1 23 378 400 378 400 0.99
3 12 6.4e-06 0.0012 20.7 0.4 2 23 408 429 407 429 0.97
4 12 1.1e-05 0.0021 19.9 1.5 1 23 435 457 435 457 0.98
5 12 0.00013 0.024 16.6 4.9 1 23 464 486 464 486 0.99
6 12 6.7e-06 0.0013 20.6 0.5 1 23 492 514 492 514 0.96
7 12 7.1e-06 0.0014 20.6 0.1 1 23 520 542 520 542 0.98
8 12 9e-07 0.00017 23.4 1.2 1 23 548 571 548 571 0.96
9 12 7.1e-05 0.014 17.4 0.7 1 23 577 600 577 600 0.96
10 12 8.1e-06 0.0015 20.4 2.7 1 23 606 628 606 628 0.99
11 12 0.00014 0.026 16.5 0.4 1 23 634 656 634 656 0.94
12 12 0.00075 0.14 14.2 0.1 1 23 662 686 662 686 0.92

Sequence Information

Coding Sequence
ATGACTTCAGCATCTATACAGGTGAGGTCGAATCCTCACTGCCTCGTGTGCAATAGTCGTGTTAGTGTATCTACTAGAAAttcttatcaaatatttaataaccaaGTGCAAACATGCTCCGAAAGACCAGTGAATTGTATCATGTCAAGTGTTCTTGGCAAAGACTTAGCACAAACAAATGTACATTCACtaattatttgcaaaaagtgtttCAAATTGTTCAACGAAGTGGACGAGTTAGAAATGAGGTTAGCAGAGATAAAGGTTGAAATCGTTGGAAATTACAAACGATCTATtcaaaaatacaagaaaaatggAGATAGAGTAATTCCTATTGAGATTGATGAAATTAAAGAGGAAGAAACCGAAGATGGGACGAAAGTGATCAAAATTCACAAAGAATTGAAGAAGAAAATACTAGATATACCTTCATCGGATGAAGAACAAcaagatACAACAAATAAAGTTGTGCTGCTCGAAGATATAGAAACTCAGTTAGCCAGATTGCACAAAGAAGATAAAACCGATGAGGATGATGATGAGAAAATGGAGACTTCAAATAATGAAGAATTGATAGAAATTCACATAGAACAAGAGTCTACTGAATCGTTCCAAGGCTTCGAAGTTCAAGAAGTACAAGCTGAAGAGACGATCGACGCTGGTGCTATTGATAATTCAGAAGATTCTGATTATGAACCACCAGATGGGGAAATGCACAACGGGCAAGAAGGGGATAACACCAATGCTTTACTTGAAGCCGCCGCCTTAGCCGAACAAACACTTAGTGAACACGgGACTGAAatgataacaataaaaatggAACCAGGGTTAGAAGATCCACACAAAATTGACAGGAGACGAGTTCCGCAAATTACAAGAAAAGCTAccaaaaataaagttattaaagaAGAATTCTTAGAACCTATAGTAAGTCGTGATGGCAACATTTACACCTGCTTAGCGTGCGACGGTGAAGAAAAATTCTCTGGTGAACCGAAAGCCATTATGCTTCACGTGAAAAACGATCACGAACTTCGAGTGTACATCTGCGACGTATGCGGTCAAGACTTCCGTAAGCGCAATGAACTCAGTATGCACTTAGACGAGCACGTCGCTACCGAGGAGGGCGACTTCCAATGCGAGGTGTGCAACAGGATCTTTAGCAACTTAAGGTTGTTCAGGATACATAAGAGGATGCATTATCCGCAGTCTAAGCTGTGGACTTGTGAGACCTGCGGCAAAAGATACAGCTCTCGCAACCTTCTGGAAGAGCACATCAACACCCACACTGGTCTCCGCCCGTATATTTGCAAGACATGCGGCAAGGATTTCGCCAGTAAATACACATACAAGGCACACGAGAAGACACATGAAGTTCGCCCCCGACCGTTCCAGTGTTCACACTGCACCAAGTCGTTCCTCTCGCAGCAGAACCTCACGCAGCACGAGCGCACGCATTCTGGCATTAAGGAATACGTGTGCCACCTCTGCGGCAAGGCCTTCGGTAGTCCACATAACCTGGAGGTGCACTCTATAGTGCACACGGGCTATAAGCCTTATATTTGTGGAATCTGTGGGAAAGCGTTTGCGAGGAAAGCAGAGATTCGGGATCATGAACGGACGCATACCGGTGAACGACCGTACCAATGCGAGTTTTGCGGAGCAACGTTCAGCCAGCGAAGCAACCTCCAGTCTCACAAGCGCGCGACGCACTACGACGACAAGCGTTACAAGTGCCAGGCGTGCGGCAAAGGCTTCAAGCGGCGACGCCTGTTAGACTACCACATGAAGGCGGCGCACACAGGCGAGCGCCCCTTCAAGTGCACGGTGTGCGACGCCACGTTCGTGTATCCAGAACACTTCAAGAAGCACCGCAGAATTCATACCGGTGAGAAACCGTTCTTGTGTGAGGTGTGCGGCAAAGCGTTCAACAGCAGAGATAACCGCAATGCACACAGATTCGTCCACAGCGACAAAAAGCCTTACGAATGCCTGGTGTGCGGAATGGGCTTCATGCGTAAACCACTTCTTTACGCTCACATGCAATCCCAAGGTCATCTGAACGACACCATCGTCGTAAACCAGCCTCGGCTCACCACAGACGACGATCAGATCGTCACAGTGAACGTGAATGGCGAAATGGAGCTGGTGGACCACGAAGTAAGCCGCCTGGAGCACATCGGCAGCGAGGCGGAGGACGGCGACGCCAGTGAGGACACCAAGCTCTACATCGCCGAGCTCAAAGAACACGTTATCATACAAGATAGTAACTTGTACGGTAACAGCAAGGGGGCGATGATTGTTGGGGAACCACTGGATGGAGAGTCGGAAACTGCGGTCCAGGATGCGGTCAAACATTTGATTATTGACGGACAGGAAGTACAATTCGCCGAAGGAGACGACGACTCCGAAGAGCATCACGTACTCACAACACAAACCATCCTAAATGAAAATGGAGAATACGAGGAAGTCGTGACAGCAGACGGACTCGTTGAAGGAGACACCCAAACCATTGAAACATCCCAGGGTCCTGTGCAACTCGTGCGCATTCGAATACCCTCTGCCGACGGCGAAGAAGAAGATGCTTGGGTTAAAATAGTGCCCGAATAA
Protein Sequence
MTSASIQVRSNPHCLVCNSRVSVSTRNSYQIFNNQVQTCSERPVNCIMSSVLGKDLAQTNVHSLIICKKCFKLFNEVDELEMRLAEIKVEIVGNYKRSIQKYKKNGDRVIPIEIDEIKEEETEDGTKVIKIHKELKKKILDIPSSDEEQQDTTNKVVLLEDIETQLARLHKEDKTDEDDDEKMETSNNEELIEIHIEQESTESFQGFEVQEVQAEETIDAGAIDNSEDSDYEPPDGEMHNGQEGDNTNALLEAAALAEQTLSEHGTEMITIKMEPGLEDPHKIDRRRVPQITRKATKNKVIKEEFLEPIVSRDGNIYTCLACDGEEKFSGEPKAIMLHVKNDHELRVYICDVCGQDFRKRNELSMHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKLWTCETCGKRYSSRNLLEEHINTHTGLRPYICKTCGKDFASKYTYKAHEKTHEVRPRPFQCSHCTKSFLSQQNLTQHERTHSGIKEYVCHLCGKAFGSPHNLEVHSIVHTGYKPYICGICGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCQACGKGFKRRRLLDYHMKAAHTGERPFKCTVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYAHMQSQGHLNDTIVVNQPRLTTDDDQIVTVNVNGEMELVDHEVSRLEHIGSEAEDGDASEDTKLYIAELKEHVIIQDSNLYGNSKGAMIVGEPLDGESETAVQDAVKHLIIDGQEVQFAEGDDDSEEHHVLTTQTILNENGEYEEVVTADGLVEGDTQTIETSQGPVQLVRIRIPSADGEEEDAWVKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01275586;
90% Identity
iTF_01275586;
80% Identity
-