Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380342.1:33230329-33232450[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.063 8.9 8.5 3.3 1 23 125 147 125 148 0.95

2 14 0.00043 0.06 15.3 5.2 1 23 148 170 148 170 0.94

3 14 9.1e-05 0.013 17.4 0.2 2 23 177 198 176 198 0.96

4 14 4.2e-05 0.0059 18.5 0.1 1 23 232 254 232 254 0.98

5 14 0.015 2.1 10.5 2.4 3 23 262 282 260 282 0.91

6 14 6.5e-07 9.2e-05 24.2 2.6 1 23 288 310 288 310 0.98

7 14 0.00046 0.065 15.2 1.8 1 23 319 341 319 341 0.96

8 14 2.5e-05 0.0035 19.2 0.1 2 23 348 369 347 369 0.95

9 14 5.5e-09 7.8e-07 30.7 0.6 1 23 375 397 375 397 0.99

10 14 9.5e-08 1.3e-05 26.8 1.2 1 23 403 425 403 425 0.98

11 14 4.3e-06 0.0006 21.6 1.3 1 23 431 453 431 453 0.99

12 14 5.4e-06 0.00077 21.3 1.4 1 23 459 481 459 481 0.94

13 14 9.8e-08 1.4e-05 26.8 0.0 3 23 489 509 488 509 0.98

14 14 3.9e-06 0.00055 21.7 0.4 3 23 517 537 515 537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.063	8.9	8.5	3.3	1	23	125	147	125	148	0.95
2	14	0.00043	0.06	15.3	5.2	1	23	148	170	148	170	0.94
3	14	9.1e-05	0.013	17.4	0.2	2	23	177	198	176	198	0.96
4	14	4.2e-05	0.0059	18.5	0.1	1	23	232	254	232	254	0.98
5	14	0.015	2.1	10.5	2.4	3	23	262	282	260	282	0.91
6	14	6.5e-07	9.2e-05	24.2	2.6	1	23	288	310	288	310	0.98
7	14	0.00046	0.065	15.2	1.8	1	23	319	341	319	341	0.96
8	14	2.5e-05	0.0035	19.2	0.1	2	23	348	369	347	369	0.95
9	14	5.5e-09	7.8e-07	30.7	0.6	1	23	375	397	375	397	0.99
10	14	9.5e-08	1.3e-05	26.8	1.2	1	23	403	425	403	425	0.98
11	14	4.3e-06	0.0006	21.6	1.3	1	23	431	453	431	453	0.99
12	14	5.4e-06	0.00077	21.3	1.4	1	23	459	481	459	481	0.94
13	14	9.8e-08	1.4e-05	26.8	0.0	3	23	489	509	488	509	0.98
14	14	3.9e-06	0.00055	21.7	0.4	3	23	517	537	515	537	0.98

Sequence Information

Coding Sequence: ATGGAATTAGCAAATTGTAATTTTGACTTTACAATAACCTGTAGGACATGTTTAGCGACGAGTACAAATTTAAAACCATTAAACGATGGAGAAATTACAAATCTGATAAGTTTTTGTACTTTTATTCAGATCTCAATGAACGATGTGTTACCAAATGGTATATGTGATCAATGTACGATGCTGGCAACTCAGTGTTTTAAATTTAAAGAACAATGTGAAAAATCTGAGAAAATTTTACGCTCTTATCTTGAACTACATAACTTTAAAGTAGATTTAGGCCAGCAGGAGGACTTGTATTCACTAAGTTCAAATATCTGTACAGGACGAGAAGCAGGTACTCAAACCGAAAAAGATACTAGCAAGCAAGTGGCATTTATTTGTCAAGTTTGTAATCAACAATTCCTACATGAAGATGAGTTTAATAAACATAAATCAACACATCATAGTTGTATACATTGCCATGAATCATTCACAAGTTCACAATTATTAAAACGACATATAAAAATGCACATGGAAAGCAATCAGTTAGTTTGTAATAAATGTGGAAAGAAGTTTGTAGAAAGTTCAGTTCTCAGCGAACATATGTTAGAACACGAAGAAAACGCAGATCTTTTACAAACTTCAACGGAAAGTTCAAATTCAGCAACAGATTTTACTAGTTTTTTAGACATGGCACCGGCATCTCCGTTAGCATTTCCATGTAATGAATGCAATCAATCATTTAGCGTTGCAGAAGATTTAGAATTACACAAAGCGACACATTCTACAAACGGTGAACATATTTGCATTCAATGTAACAAACAATTCGCAGCACGACAAACATTAAAACGTCACGTAAAAACACACATGATTCACAAACCTCATGTTTGTAAAGAATGTGGTAAAGGTTTTGCAGAATCTCACGCCCTGACAAAACACATGCGTCGTCACGCCGGTCTTCCAAGGGAAAAGAAACATTTCTGCCAATTTTGCGGTCAAGGATTCACAGAGCCATTTTATCTCaacgtgcatgtaaggaagcatactggcgaaagaccgctgatgtgtgcaacttgtggaaaaagttttgcagatccaagatccctaaaggcgcataatatgatacattctggagagcgaccttttaagtgtccaatttgCAAtaaaggcttcactcagagtgtaaacctaactaaacacattcgaattcacaccggagagcgtccttatatttgctccgaatgcggaaaaagtttcactcagtcttccagccttgacaagcactcccgtacgcattcaggagttcgtccctacagctgcacggagtgccccaagcgcttcgcggaacgtgggactttggtccatcacctccgcacccacacgggtgaaaagccgtttgtatgtacgcattgtggcaaagccttcgcgagtagcagtgagctgaagttacatgatcgaagacactctggagtgaaaaagaatatctgtccggtttgtgggaaggattttgccactccgagtaatttagtgatacatatgagaagtcatacgggtgaacgaccttttgggtgtgagttctgtggaaaggcgttcgcggataaagggagcttgaagaaacatgtgaaTAGGCATCAAGAAAACAAGAGGGATGGTGGTGTCATAGAACAGGATAGATTTTATAATTTGACTTAA
Protein Sequence: MELANCNFDFTITCRTCLATSTNLKPLNDGEITNLISFCTFIQISMNDVLPNGICDQCTMLATQCFKFKEQCEKSEKILRSYLELHNFKVDLGQQEDLYSLSSNICTGREAGTQTEKDTSKQVAFICQVCNQQFLHEDEFNKHKSTHHSCIHCHESFTSSQLLKRHIKMHMESNQLVCNKCGKKFVESSVLSEHMLEHEENADLLQTSTESSNSATDFTSFLDMAPASPLAFPCNECNQSFSVAEDLELHKATHSTNGEHICIQCNKQFAARQTLKRHVKTHMIHKPHVCKECGKGFAESHALTKHMRRHAGLPREKKHFCQFCGQGFTEPFYLNVHVRKHTGERPLMCATCGKSFADPRSLKAHNMIHSGERPFKCPICNKGFTQSVNLTKHIRIHTGERPYICSECGKSFTQSSSLDKHSRTHSGVRPYSCTECPKRFAERGTLVHHLRTHTGEKPFVCTHCGKAFASSSELKLHDRRHSGVKKNICPVCGKDFATPSNLVIHMRSHTGERPFGCEFCGKAFADKGSLKKHVNRHQENKRDGGVIEQDRFYNLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226019; iTF_00029527; iTF_00470146; iTF_00767419; iTF_01104931;
90% Identity: iTF_01226019;
80% Identity: -