Pnig012560.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- SMARCC2
- Assembly
- GCA_947425015.1
- Location
- OX380347.1:14315287-14318904[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.3 1.8e+04 -2.5 0.1 3 10 168 175 166 176 0.83 2 3 1.3 2.9e+03 0.0 0.0 33 43 197 207 192 209 0.86 3 3 4.7e-13 1e-09 39.9 0.1 3 42 595 634 593 638 0.93
Sequence Information
- Coding Sequence
- ATGATAGCGTTTGGTCCCAAAAAAGATGGCAGTCCAAATTCGAAATTTTTTGAATCTCCAGAAACAGTGACATTATTCGATGGAGTACGACAGTGGTTGTTAAAGACCTGTAAAAAGTATGTCCAGGCCGACCCGCCAACAAATAAGAGTTTGGCAACTTTAGTAATACAATTACTACAATTCCAAGAGGATAATCTGAGTAAAAATGCAACTAAACCAGCATTAACTAGAATTCCAATGAAATGTTTTATGGACTTTAAAGTTAATGGAGGCTTATGTCATATTTTGGCAACAGCATACAGATATAAAAGTGAACAAGGATGGCGAAGATTCGATTTGCAGAGCCCTTCTCGGCTGGATCGAAACACGGAAATGTTTGTTTCAATAGAGCGAGCTTTGGTACAAAACAAATGTCACACAATTCCTGTTGTATACGTTAGACCAGAAGTAGATAAAGCAACTGCCAGTAAAGCAAAAGAATTAATTAAACGTCATCAAGGAATATGGACTGAAGTGGAAGATGATGCAACGCATATATTGTACCCGCATTGTGATCCATTAGAAGAAGAATATGCAAGGCCCACAATGCGAAGAGACAAAAATGTTATGTTGCATTGGTATTACTTTCCAGATTCATACGATACGTGGGTAAGTACTGAGTTAAGTTTGGACGTACCAGAGAATATCACACAGCATATAGGCCAGTGGCGTGTGAGCATCTCTTGGTTGATAGAAAGTGACCAGTACAATGAATGGATGACTGAAGAAGATTACGAAGTGGACGAATCAGGACGAAAGAAAGTACATAAACTGCGGATGTCTGTAGAGGATCTAATGAATCCTGCCGGCGATCCCGATCGCAGCAAAAAGAAACAAAAACGGAAACGGTCGCCATCGCCACCTCTCAAACAAGGTAAAAGAAAAAGCGGCCGAAGTCCTGCAGTCGGTAATAAGAAACACAGATTCGGCGACGATGTTGAAACAGAAGATCTCACGAAAGACATGGATGATCCCGTTCCGGAGCCCAATGTCGTAGAAGTAGCGGTGGCGAAACCGTGTCCGACTACTGTGACCAACAAGAAAGACCATGAGCTTCAGCCTCTCAAAGGCGGTTCAATGACAGATTTAGATGAAACAGAGGACAAAGGTGAGGATTCACAGATGGGTAAGACGAGCGATACAAATACCCAAGAGTTCATGAGTAAAGATGATGGCCAAGAAGACAATGTTACAGAACAAACTCACCATATCGTAGTGCCATCATATTCAGCGTGGTTTGACTATAATTCTATACATGTCATCGAAAAACGAGCGTTGCCAGAATTTTTTAATGGAAAGAATAAATCAAAAACACCGGAAATATATTTGGCATACAGGAATTTCATGATTGATACTTATCGGCTCAATCCGACTGAGTATATCACCAGTACGGCATGCAGACGCAACTTGGCAGGTGACGTGTGTGCTATTATGCGGGTACATGCATTTCTTGAACAGTGGGGTTTAATTAATTACCAGGTGGACACGGAATCACGGCCAACAGCCATGGGACCACCACCCACGTCACATTTCCATGTGCTATCTGATACACCGTCTGGTTTGCAACCTGTGAATCCACCGAAGACACCGCAGCCAAGTGCGGCTAAATCTCTGCTTGATTTAGATAAAAATGACATTAAGAAACCGGAGATTGAACAGCCAATGCAGTTTGGCTTGAAACTGGATCAGTATGTCCGGAAACCAGCCGCCATGCGTAACAAGACCGCAGCATCCCTCACCAGAGACTGGACGGAACAGGAGACGCTACTTCTTCTTGAGGGCTTGGAAATGTACAAAGATGACTGGAACAAAGTTTGTGAGCACGTCGGTACACGAACACAAGACGAGTGCATACTAAACTTCCTCCGTTTACCAATTGAAGATCCGTACCTTGAGGATCACGAGGCTGGCGGAGCTTTAGGGCCTCTGGCATACCAGCCTGTACCATTTAGTAAATCAGGTAATCCAATCATGTCCACTGTAGCATTCCTAGCTTCAATTGTAGACCCACGAGTGGCGGCAGCTGCTGCTAAGTCGGCTATGGAAGAGTTTGCAAATATTAAGGATGAAGTACCGGCCGCATTATTAGACGCACACTTGAAAAATGTTGAAGCGTCATCAACAGACGGAAAGTATGATCCAGCTGCCGGTTTAGCCAGCAGTGGCATCGCTGGGACACTACCCGAAAAGGAAGAGGAAGATAAACTCAAGAAAGATACGGAATTGAAAGAAGAAGAGTGCGAGAAGCCTGCTAGTAATGCTGGTGAATGTAGTGATCAGAAAAAGAATGGAATTGAACGACCTGAACCTATGGAGATTGAGAAAATGGAAGACAAAGTGAAATTGGAGTCTACTGTTACCGTAAAAGAAGAAACTCGTTCTGAAAGTGGAAGTCGAGACCAGTCGAGCACGAAAGATTCGGAAGAAGGTACATCAACAGGTGGTCAAGGCGAACCAACACCGAAAACAGTAAAAGATGCGCAAATGCAAATGGCAGCTGCGGCAGCATTATCGGCCGCGGCAGTCAAGGCGAAACATCTAGCAGCTGTTGAAGAAAGGAAGATTAAATCACTAGTAGCTTTGTTAGTAGAAACACAAATGAAAAAATTGGAAATCAAATTACGTCATTTCGAAGAGCTGGAGACTACGATGGAAAGAGAAAGGGAAGGATTAGAGTACCAGCGCCAGCAGCTAATCACCGAGCGTCAGCAATTCCACCTGGAGCAGTTGAAGGCCGCAGAGTTCCGCGCACGTCAGCAAGCCCACCAACGACTGCAGGCAGAGCAAGGCGGCCAATGGCATCAACCCGTGCTTCACCCACCCGGATCTGCTGCTGGTCCTGGCCCTGGATCTACAGCTTCCACACCAAACTCAGGTAGCGGTGGTGCTCAGTTGACAAACATGCCTCAGTCCAGCGATGCAAACCAGACGTCGACTCCTACACCACCTTCGCCTCAGGCCGCTGTCGTCGCCAATCCGCCCGTTGCCCATCAAGCGTCGATGTAG
- Protein Sequence
- MIAFGPKKDGSPNSKFFESPETVTLFDGVRQWLLKTCKKYVQADPPTNKSLATLVIQLLQFQEDNLSKNATKPALTRIPMKCFMDFKVNGGLCHILATAYRYKSEQGWRRFDLQSPSRLDRNTEMFVSIERALVQNKCHTIPVVYVRPEVDKATASKAKELIKRHQGIWTEVEDDATHILYPHCDPLEEEYARPTMRRDKNVMLHWYYFPDSYDTWVSTELSLDVPENITQHIGQWRVSISWLIESDQYNEWMTEEDYEVDESGRKKVHKLRMSVEDLMNPAGDPDRSKKKQKRKRSPSPPLKQGKRKSGRSPAVGNKKHRFGDDVETEDLTKDMDDPVPEPNVVEVAVAKPCPTTVTNKKDHELQPLKGGSMTDLDETEDKGEDSQMGKTSDTNTQEFMSKDDGQEDNVTEQTHHIVVPSYSAWFDYNSIHVIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDTESRPTAMGPPPTSHFHVLSDTPSGLQPVNPPKTPQPSAAKSLLDLDKNDIKKPEIEQPMQFGLKLDQYVRKPAAMRNKTAASLTRDWTEQETLLLLEGLEMYKDDWNKVCEHVGTRTQDECILNFLRLPIEDPYLEDHEAGGALGPLAYQPVPFSKSGNPIMSTVAFLASIVDPRVAAAAAKSAMEEFANIKDEVPAALLDAHLKNVEASSTDGKYDPAAGLASSGIAGTLPEKEEEDKLKKDTELKEEECEKPASNAGECSDQKKNGIERPEPMEIEKMEDKVKLESTVTVKEETRSESGSRDQSSTKDSEEGTSTGGQGEPTPKTVKDAQMQMAAAAALSAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLQAEQGGQWHQPVLHPPGSAAGPGPGSTASTPNSGSGGAQLTNMPQSSDANQTSTPTPPSPQAAVVANPPVAHQASM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768182;
- 90% Identity
- iTF_01225604;
- 80% Identity
- -