Plou009525.1
Basic Information
- Insect
- Psyttalia lounsburyi
- Gene Symbol
- -
- Assembly
- GCA_030522865.1
- Location
- JAPYZN010003649.1:3613-9164[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2e-05 0.0033 18.7 0.7 1 23 36 58 36 58 0.95 2 15 0.00074 0.12 13.8 1.1 3 23 66 86 65 86 0.99 3 15 6.4e-05 0.011 17.2 0.0 1 23 184 206 184 206 0.98 4 15 0.062 10 7.8 0.1 1 23 212 235 212 235 0.97 5 15 6.3e-05 0.011 17.2 1.8 1 23 261 283 261 283 0.98 6 15 1.4 2.3e+02 3.5 0.0 1 23 299 321 299 321 0.86 7 15 0.27 46 5.7 0.2 2 23 328 350 328 350 0.95 8 15 0.0031 0.52 11.8 3.0 2 19 358 375 358 379 0.95 9 15 0.00015 0.026 16.0 3.5 3 23 387 407 385 407 0.97 10 15 0.011 1.9 10.1 0.1 3 23 414 434 413 434 0.97 11 15 6.5e-06 0.0011 20.3 0.4 1 23 443 465 443 465 0.98 12 15 0.0028 0.47 12.0 0.2 3 23 473 493 471 493 0.97 13 15 0.0025 0.41 12.2 0.2 3 23 501 521 499 522 0.94 14 15 0.16 26 6.5 0.0 1 23 536 558 536 558 0.92 15 15 0.0039 0.65 11.5 0.0 1 20 919 938 919 941 0.93
Sequence Information
- Coding Sequence
- GTTGAAATACCAGAAACAAAAGTCTCTCATGACAATCTCCTGGAGTACGATGACATGGAGATTCCCTTGCCGATCGACCAGGATTCTTACACAAATACCCGGCCCTATCCCTGCGACTTCTGCAGCCGTCGTTTCCGGAAGAAGGCAAACCTGATGAATCATATGGTGGCACATCAAACTGATCGTCCACATGGCTGTAACTTGTGCGGCGCCCGCTACGTCCGTAAGTGCGATCTAAtgaatcatttgaaaattcacgCGTACGCTCCCACCCGCGACGGTCTCGAGGACGATCTCCAGTCCGAAGATCTTCAAGACGATGACGAACCCCCTAAGGGTCGACGAAAGAAGCCTCAGGCTCCGCGTAAACGCAAACCTATTCAGAAGCGTCCCATGAATCCGTTGGATACCTCTATAGATCAGCCAGACAAGCTGCCGAGGCTCCAGAAATCCTTTGATTACGTCGACGAGGATATGCGCCTCCTCGAGGAAATGACCACGCGACCAAATTCTGCCCCTCGATGGCCAATAACTGACCCTACAAAACCCTACGTCTGCCAGTACTGTGGTGTAGGTTTTGCTCGAGAGAAGGCCCTTGCCTCCCACGCACGCATTCACGGTGGTGATAGCCCCTTTGAGTGCACAAACTGCGGAGATATGTTCTGGGACGTAAATGCTCTTCGTGATCACATCCGCATAAAGCACGGAGTCACTCAATCTCCAATCGACGAATTTGAAACTTCTGAGACCCCCTATACCGGGGATGATAGGTTCGGTGAGTTCTACTGCGAGACTTGCGGTGTTCCATTTCACCGGCTGGATCTTCTCAAGCGCCACCGAAAGATTCACGTTAAACAAGAAGGTGGAGGTGAGCAGGTGGACGCGGGTAATCACCACGTGTGCAACGTCTGTGGTGAGTGGTTTGAGGAAGCACTAGCGCTGTTGGCTCATGCTGAACTTCACGCGAGATCTCCCACGAGACGTTGCCTCCTCTGTGGAGAACGTTGTCGTGATGACGCCCAAGTCGCGGAACACGTGCGACTCATTCACGGAGAAGATGCACCTCCTAATACGTGCACCCTTTGCGGAAAAACATGCAAAGATAAGCGAAGTTTGCTGAAACACTCGTGGGTCCATAATACCGATAAAACCTTCGGCTGTACCAAGTGCGGCAAGCGATTTCATTCGAAAGCGCGATTACGGAGACACATGGTGAGTCACAGAAACAAAATGGTGGCTTGTGACGAATGCGGAGAGGAGTTTCCTGACGGTAGGGCATTGGTGTCTCACCGACATTCGCATAATAAAGAGTTAGGAGGACGGTCATTTCCGTGTAGAGAGTGTGGGAAGACTTTTGGAAGCAGAAGTTCTCAGCAGATTCACATTAGGATTCATACGGGGGAGAGACCGTACGGTTGTAGATTCTGCTGGAAAGCTTTTGCCGATGGTGGAACACTGAGGAAACATGAGAGAATTCATACCGGCGAGAAACCGTACGGTTGTGCTATTTGTCCCAGGGCGTTTAATCAGAGAGTTGTACTTCGAGAACATGTGCGAGCACATCACTCAGGCCCTGATCCCAAGTGTCATGGAAGCCTGACTCCCTACCTCTGTAAAGTGTGCGGAGATTCATTCGGATCGTCAGAGGAGATCATCTTGCATATCGTGCAACACTGTGATGATAACACCGCGTTGAGGCGACAGCCACAGGTGGGCCCCAGGAAGTACAAACGGAGGAGGAAACTAAAACCTCATGAGAGCCCAATAATTCCTCAGAGGAATGAATTCGATAATATCGAACTTTCTGAATCCGATGAAAATAGCAAACGAAAGACGAAGAAGAGTACTAAGCGATCTATTGACGAAGGTTATCAGTCTGTTTTGAAGTCGTTTGAGAGTTCCATTCAAAATATCAATTCGATTGTAAGTAGCACCAAGACCAGCAAGACTGGAAAGGTGAAGAAGAAGGTGAAAAAGGAGGAGAAGAAGGTGCCTGAGAGTAGCACAACGTCAAATTCGGGTCGTCCGAAGATGATTCACACGCAGAAGACCAGAGTACCGGTTGAAGTTGGTAGCGATGGCGTGAAGAAGGGTCAGAAAACCAAAACCATGGTTACCAGGACGCCAAAGGTGATGCCTGGAGAACGCGGAATATTCCCTGGCGGTGAGAGAAACCGACCGAGAACTAAGAATGTCAGCTATCATGTTGAGGGAAGGAATATCATCCCTGCTACATTCCCAGGGATGACAGCTGAGATTATTGAAGCACCACCCGCTCAAGCAGCTGAATCCGAGCCAGCGCCATCATCACCAATATCAACAACATCACCTTCTCAGGACTTTGTCCAGGTAACTGTTAAGAGTGAGCCACAAATGACCACCAGATCAGCTGCCAATCATTCGAATGGAGCGAATTTCAATCTCAGAGAGATCGAGgctaaaaagaaaatgaagaaaggAAGTAAGAAAGTTAGCAGAACTATCAAACAGGAACCTAGGGAGGAAGTTATAGAGGAACAGTTACCGGAAGATGAGGTTGTTGATGAAGTGCCTAAAGTTGCTATGGAGATGGAAGTTGGATTTGAGGAGACTATTGAGGAAAATGGCGAAAGCATTCTCCCGGATTTGGAAAATGTTCATCATAATATCGTTGTACCGGAAAAAGTCAGTCTCCGGGTCAAGGTGGAGGCTACTGCCACCCGAAGATTACTTGAGGAGGAGGTAGCTGAAACTATTGTACCGGACACACTCGAGTACATGTGTGAAATGTGCTCGGCTGTATTTTCGAGCCGCGCGGAGTTGCTTGTACATGTTCCTATACATATTTGA
- Protein Sequence
- VEIPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLMNHLKIHAYAPTRDGLEDDLQSEDLQDDDEPPKGRRKKPQAPRKRKPIQKRPMNPLDTSIDQPDKLPRLQKSFDYVDEDMRLLEEMTTRPNSAPRWPITDPTKPYVCQYCGVGFAREKALASHARIHGGDSPFECTNCGDMFWDVNALRDHIRIKHGVTQSPIDEFETSETPYTGDDRFGEFYCETCGVPFHRLDLLKRHRKIHVKQEGGGEQVDAGNHHVCNVCGEWFEEALALLAHAELHARSPTRRCLLCGERCRDDAQVAEHVRLIHGEDAPPNTCTLCGKTCKDKRSLLKHSWVHNTDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKELGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHGSLTPYLCKVCGDSFGSSEEIILHIVQHCDDNTALRRQPQVGPRKYKRRRKLKPHESPIIPQRNEFDNIELSESDENSKRKTKKSTKRSIDEGYQSVLKSFESSIQNINSIVSSTKTSKTGKVKKKVKKEEKKVPESSTTSNSGRPKMIHTQKTRVPVEVGSDGVKKGQKTKTMVTRTPKVMPGERGIFPGGERNRPRTKNVSYHVEGRNIIPATFPGMTAEIIEAPPAQAAESEPAPSSPISTTSPSQDFVQVTVKSEPQMTTRSAANHSNGANFNLREIEAKKKMKKGSKKVSRTIKQEPREEVIEEQLPEDEVVDEVPKVAMEMEVGFEETIEENGESILPDLENVHHNIVVPEKVSLRVKVEATATRRLLEEEVAETIVPDTLEYMCEMCSAVFSSRAELLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00048143;
- 90% Identity
- iTF_00438930; iTF_00438260;
- 80% Identity
- -