Pcon010436.1
Basic Information
- Insect
- Psyttalia concolor
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_030522845.1
- Location
- JAPYZM010004056.1:7480-9597[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-115 8.9e-111 371.0 36.1 1 300 29 324 29 324 0.97 2 3 0.0049 1.9e+02 2.2 2.9 122 171 324 373 322 376 0.91 3 3 0.051 1.9e+03 -1.1 5.7 194 238 355 398 343 399 0.58
Sequence Information
- Coding Sequence
- ATGGAGTCAACGGTTGCGGGACGGAGGCGTACCGCCACCAGACACTCAGCCGAAGATCAGGCCCTCGATCAAATAGCCAAGGAGGCAGAGGCAAGATTGGCAGCGCGAAGGCAGGCGAGGGCTGAAGCGAGAGAAATTCGGATGAGAGAATTGGAGAGACAGCAGAAAGAGGCTGAGGAGAATGCCGATAGGGTCTATGACATGTGCACCTCCGATGGGAGGACCATGAGGGTCACTCCAGATCCTATTAGAACCTCGCGTCTCCTCAcaaattccaataatttccaGTCGAGTCGAAGGTCCTCCGAGGACTCCCTGGAGGATGCCGGTCTCAATAGGGACATTAGATTAGAGTTAAAGGAGTATGAGGAAAAATTCCGGAAGGCTATGATTGCCAATGCTCAACTTGACAATGAAAAATCCTCGTACTCTTATCAAGTGGAGCTGTTGAAGGACAAGCTGGAGGAGTTGGAGGAGTCATCGGCGACTCTGCGACGCGAGCTCAGGGAAAAGAATAGGGAGTCTGAACAACTTAAGCGAGTTAATCAGCGGTTAAAGGAGGAGCTGGAGATTTGCAAAGCTCAATTGCTGGAGAGGGACACACTTATACAGGATAATGGGCTAGTTATAGTGGAGGATGAGGGCAGCGAGGGGGAGGAGACGGGTGGAATGAATGGAGTTAGTAGGAAGAGAGTGCTAGTCAGTACAGAGGCTGCTGAGTTGCTGCAAAATGCTGGTGAAGGCTCATTAGACGTTCGATTGAGGAAGTTTGCGTCGGAGAAGAAGGAATTGCAGGATGAAATAAGACATTTAAGACTAGATTTGGAGGAGGCGAAGAGTCGCAACAGGTCCGAGAAATCGTCGGGATCAATATTAGGTCTGGCCGATTCAGAGGATGTTCAACGAGAAGCCAATAAACTACTCGCAGATTATAAATTTAAACTACAAAAAGCAGAACAGGACATGTCCACACTGCAAGCAACAGTGGCGAGGCTAGAGAGCCAAGTGATTCGTTACAAATCAGCGGCTGAGGCTTCAGAGAAAGCAGAAGACGAGCTGAAGGTTGAAAAGCGTAAATTACAGAGAGAAGTGAGGGAGTCTCAGGGACGAGTTGAGGAACTAGAGACGGCGAATTCTCACCTTCAGCGGCGCCTTGATAAactgaaaaatgccaagtctGCCCTTCTGAAAGAACTCTGA
- Protein Sequence
- MESTVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTSDGRTMRVTPDPIRTSRLLTNSNNFQSSRRSSEDSLEDAGLNRDIRLELKEYEEKFRKAMIANAQLDNEKSSYSYQVELLKDKLEELEESSATLRRELREKNRESEQLKRVNQRLKEELEICKAQLLERDTLIQDNGLVIVEDEGSEGEETGGMNGVSRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLDLEEAKSRNRSEKSSGSILGLADSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00687172;
- 80% Identity
- -