Pgib012948.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:4517461-4544775[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00033 2.1 9.0 0.1 18 49 193 229 191 231 0.80 2 8 0.00048 3.1 8.5 0.1 20 49 336 370 333 372 0.79 3 8 0.073 4.6e+02 1.5 0.0 21 37 417 433 413 447 0.87 4 8 0.002 12 6.6 0.0 23 48 561 591 555 593 0.79 5 8 0.13 8.2e+02 0.7 0.1 21 37 636 652 632 664 0.83 6 8 0.0013 8.5 7.1 0.2 20 49 775 809 770 811 0.75 7 8 0.064 4.1e+02 1.7 0.0 21 37 856 872 848 887 0.85 8 8 0.29 1.8e+03 -0.4 0.0 25 48 952 980 946 983 0.66
Sequence Information
- Coding Sequence
- ATGAGAGGGTTCATTTTAGGATTAATAAAGGCAACACGAGTGTTATTTATCCATAGTGGCCTTTCGAAAGCACCGTTTGAAAGGATCTTGAAACGGAGTGAAGAGTCAAAACTGGATCCATTTGCGCTAAGCCTAATAGTGTCAACGAAATCGCTGGTGTGGCACTTCTTCTGGAAGGACGTTGAGAGAGGCATGAGTACGTGCAAAGTCTGCAGCTTGGGCGTGAAAACGACGGGTGGAAACACGAAGGGCATGCGGGGTCACTTGTTCTCCAGGCATCCTCTCGAAGGCGAGAGTCTTCGACAGCTGGAGATGCAGAAGAGGCAGAAGAAGTTGGAATATGAGGCGTTTAAGGTGCAATATGTGAGCGAAACACATGATGTGGAGAGTTCTGAAAAAAGATCAGGCATTCATGGAGAAGTGGAAAGCACTGATTTATTAGaggaattaattattcaatCTGGTGTGGCCGAAGAAGAGGAGAACCAACAGAGTGAACAAACTCCTACGCAGACGGATTTATTAGAGTCGAAGACAGGACATAAGAAACGTTCAAAAGTGTGGTTGTACTTTATAAGAAATAAAGACGAAGGAAGTGCTACTTGCAAACTTTGCAAAGCGACACTGCGCATTCTTAATGCATCACCTACTACTAACCTATTACGACACTTGCGCACAAAGCACCATTCACTTTATGAATATGACATGAAAGAGAACGTAGACACATCTGTTCCTCAGGACAATGTCACCTTAAAGAGAGCTGATGAGAAGAAATCCGATGTGAGCAAATCGCATGATGTGGAGAGTTCTGAAAAAAGAGCAGACATTCGTGGAAGAATGGTATTGGAAAGCACTGATTTATTGGaggaattaattattcaatCAGGTCTGGACCAAGAAGAGGAGAACCAACAGAGTGAACCGACTCCTGCGCAGGCGGATTCATTAGAGTCGAAGACAGGACATAAGAAACGTTCATTAGTGTGGGTGtactttataaaaaataaagacgAAGGAAGTGCTACTTGCAAACTTTGTAAAGCGACACTGCGTACTCCTAATGCATCATCTACTACTAACCTGTTACGGCACTTGCGCTCAAAGCACCATTCACTTTATAAATATCACATGAAAGGGAATGTAGACACATCTGTTTCTCAGGGCAATATCACCTTAAAGAGAGCTGATGCGAAGAAATCCGGATCAACGAAATGTGCAAAGGTTTGGATGTATTTTGTAGAAGATGAAAGCCAAGCAAGTGCTACTTGCAACTTATGCGGAGCCAAAGTGAAAACGTCTTATGGAACTACCACTGGCTACATTAGTCATTTGCGCAACAAGCACACTTCAGCTTACATATCGCTGGGCCTCAAGGTTAAAACTGACGAAACTGCTTCTGATATGGCTACCGTTCAAAAGACTACTCCCTTGAAGTTAAGCCCGAAAACGGAGGATGGGAGCAAATCGCATGATGTGGAGAGTTCTGAAAAAAGAGCAGGCATTCATGGAGAAATGGTATTGGAAAGCGCTGATTTATTGGAGGAATTTATTATTCAATACAAAGAGGAGGAGAACCAACAGAGTGAGCCGACACCTACGCAGAAGGATTCATTAGAGTCGAAGAAAGGACCTAAGAAACGTTCAAAAGTGTGGTTGtactttataaaaaataaagacgGAAAAAGTGCTACTTGCAAACTTTGCAAAGCGACACTGCGCTGTCTTATTGACTCATCCACTACTAACCTGTTGCGGCACTTGCGCACAAAGCACGATTCTCTTTATGAATACGAGATGAAGGGGAATGTAGACACATCTGTTCCTCAGGACAATGTCACCTTAAAGAGAGCTGATGCGAAGAAATCCGGATCAACCAAACTTTGGATGTATTTTGAAGAAGATGAAAGCCAAACAAGTGCTACTTGCAACTTATGTGGAGCCAAAGTGGAAACGTCTTATCAAAGTACCACTTGCTACATTGGTCATTTGCGCAACAAGCACAGTTCAGCTTACATATCGCTGGGTCTCAAAGCGAATACAGACGAATCTGGTTCTGATATGGCTACCGTTCGAAAGACTACTCCCATAACGAGGGATGGGAGCAAATCGCATGATCTGGAGAGTTCTGAAAAAAGAGCAGACATTCATGGAGAAGTGGTAGTGGAAAGCACTGATTTATTGGaggaattaattattcaatCTGGTGTGGCCGAAGAAGAGGAGAACCAACAGAGTGAACAAACTCCTACGCAGACGGATTTATTAGAGTCGAAGACAGGAACTAAGAAACGTTCAAAAGTTTGGTTGtactttataaaaaataaagaagaaagaagtgcTACTTGTAAACTTTGCCAAGCGACACTGCGCACTCTTAATGCATCATCTACTACTACCCTGTTACGGCACTTGCGCACAAAGCACCATTCACTTTATGAATACGAGATGAAAGGGAATGTAGACACATCTGTTTCTCAGGGCGATGTCACCTTAAAGAGAGCTGATGCGAAGAAATCCGGATCAACGAAACGTTCAAAGGTTTGGATGTATTTTGAAGAGGATGAAAGCCAAACTGGTGCTACTTGCAACTTATGTGGAGCCAAAGTGAAAACGTCTTATCGAACTACCACTTGCTACATAAGTCATTTGCGCAACAAGCACAGTTCAGCTTACATATCGCTGGGCCTCAAGGTGAATACTGACGAAACCGGTTCTGATATGGCTATCGTTCGAAAGACTACTCCCTTGAAGTTAAGCCCGAAAACGGAGGATCAAGCTATTTCTCTTGTTGCAGAGCCAAAAATGAAGTCAAGAGTTTGGTTGTTTTTCACGAAGGATGAGAACGGAACTATAGCAACTTGTCAATTGTGCAGTCATAAGTTGACCTTGAACCGCTATGGAGGCACCACCGCTCTCCGGAAACACATTGAACATAATCACGTTGAGTTTTCCAACTCGCTCGACCGAAACAATAAAGTTGAGAAAAAGATTGTGAATGGAAATGTCTACTATATTTTGAATTAA
- Protein Sequence
- MRGFILGLIKATRVLFIHSGLSKAPFERILKRSEESKLDPFALSLIVSTKSLVWHFFWKDVERGMSTCKVCSLGVKTTGGNTKGMRGHLFSRHPLEGESLRQLEMQKRQKKLEYEAFKVQYVSETHDVESSEKRSGIHGEVESTDLLEELIIQSGVAEEEENQQSEQTPTQTDLLESKTGHKKRSKVWLYFIRNKDEGSATCKLCKATLRILNASPTTNLLRHLRTKHHSLYEYDMKENVDTSVPQDNVTLKRADEKKSDVSKSHDVESSEKRADIRGRMVLESTDLLEELIIQSGLDQEEENQQSEPTPAQADSLESKTGHKKRSLVWVYFIKNKDEGSATCKLCKATLRTPNASSTTNLLRHLRSKHHSLYKYHMKGNVDTSVSQGNITLKRADAKKSGSTKCAKVWMYFVEDESQASATCNLCGAKVKTSYGTTTGYISHLRNKHTSAYISLGLKVKTDETASDMATVQKTTPLKLSPKTEDGSKSHDVESSEKRAGIHGEMVLESADLLEEFIIQYKEEENQQSEPTPTQKDSLESKKGPKKRSKVWLYFIKNKDGKSATCKLCKATLRCLIDSSTTNLLRHLRTKHDSLYEYEMKGNVDTSVPQDNVTLKRADAKKSGSTKLWMYFEEDESQTSATCNLCGAKVETSYQSTTCYIGHLRNKHSSAYISLGLKANTDESGSDMATVRKTTPITRDGSKSHDLESSEKRADIHGEVVVESTDLLEELIIQSGVAEEEENQQSEQTPTQTDLLESKTGTKKRSKVWLYFIKNKEERSATCKLCQATLRTLNASSTTTLLRHLRTKHHSLYEYEMKGNVDTSVSQGDVTLKRADAKKSGSTKRSKVWMYFEEDESQTGATCNLCGAKVKTSYRTTTCYISHLRNKHSSAYISLGLKVNTDETGSDMAIVRKTTPLKLSPKTEDQAISLVAEPKMKSRVWLFFTKDENGTIATCQLCSHKLTLNRYGGTTALRKHIEHNHVEFSNSLDRNNKVEKKIVNGNVYYILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01272332;
- 90% Identity
- iTF_01272332;
- 80% Identity
- iTF_01272332;