Pgib012948.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- -
- Assembly
- GCA_963971405.1
- Location
- OZ020488.1:4517461-4544775[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.8e-06 0.00092 19.7 0.2 1 44 51 94 51 94 0.88 2 9 2.1e-12 1.1e-09 38.7 1.1 1 43 185 228 185 229 0.97 3 9 8.1e-13 4.2e-10 40.0 1.1 1 43 326 369 326 370 0.96 4 9 9.6e-11 5e-08 33.3 0.2 1 43 406 448 406 449 0.95 5 9 3.1e-12 1.6e-09 38.1 2.0 1 43 548 591 548 592 0.96 6 9 2.4e-10 1.3e-07 32.0 0.9 2 44 626 668 625 668 0.96 7 9 7.2e-11 3.8e-08 33.7 2.8 1 43 765 808 765 809 0.96 8 9 1.3e-11 7e-09 36.1 1.8 1 44 845 888 845 888 0.97 9 9 6.1e-09 3.2e-06 27.5 1.2 1 43 937 980 937 981 0.95
Sequence Information
- Coding Sequence
- ATGAGAGGGTTCATTTTAGGATTAATAAAGGCAACACGAGTGTTATTTATCCATAGTGGCCTTTCGAAAGCACCGTTTGAAAGGATCTTGAAACGGAGTGAAGAGTCAAAACTGGATCCATTTGCGCTAAGCCTAATAGTGTCAACGAAATCGCTGGTGTGGCACTTCTTCTGGAAGGACGTTGAGAGAGGCATGAGTACGTGCAAAGTCTGCAGCTTGGGCGTGAAAACGACGGGTGGAAACACGAAGGGCATGCGGGGTCACTTGTTCTCCAGGCATCCTCTCGAAGGCGAGAGTCTTCGACAGCTGGAGATGCAGAAGAGGCAGAAGAAGTTGGAATATGAGGCGTTTAAGGTGCAATATGTGAGCGAAACACATGATGTGGAGAGTTCTGAAAAAAGATCAGGCATTCATGGAGAAGTGGAAAGCACTGATTTATTAGaggaattaattattcaatCTGGTGTGGCCGAAGAAGAGGAGAACCAACAGAGTGAACAAACTCCTACGCAGACGGATTTATTAGAGTCGAAGACAGGACATAAGAAACGTTCAAAAGTGTGGTTGTACTTTATAAGAAATAAAGACGAAGGAAGTGCTACTTGCAAACTTTGCAAAGCGACACTGCGCATTCTTAATGCATCACCTACTACTAACCTATTACGACACTTGCGCACAAAGCACCATTCACTTTATGAATATGACATGAAAGAGAACGTAGACACATCTGTTCCTCAGGACAATGTCACCTTAAAGAGAGCTGATGAGAAGAAATCCGATGTGAGCAAATCGCATGATGTGGAGAGTTCTGAAAAAAGAGCAGACATTCGTGGAAGAATGGTATTGGAAAGCACTGATTTATTGGaggaattaattattcaatCAGGTCTGGACCAAGAAGAGGAGAACCAACAGAGTGAACCGACTCCTGCGCAGGCGGATTCATTAGAGTCGAAGACAGGACATAAGAAACGTTCATTAGTGTGGGTGtactttataaaaaataaagacgAAGGAAGTGCTACTTGCAAACTTTGTAAAGCGACACTGCGTACTCCTAATGCATCATCTACTACTAACCTGTTACGGCACTTGCGCTCAAAGCACCATTCACTTTATAAATATCACATGAAAGGGAATGTAGACACATCTGTTTCTCAGGGCAATATCACCTTAAAGAGAGCTGATGCGAAGAAATCCGGATCAACGAAATGTGCAAAGGTTTGGATGTATTTTGTAGAAGATGAAAGCCAAGCAAGTGCTACTTGCAACTTATGCGGAGCCAAAGTGAAAACGTCTTATGGAACTACCACTGGCTACATTAGTCATTTGCGCAACAAGCACACTTCAGCTTACATATCGCTGGGCCTCAAGGTTAAAACTGACGAAACTGCTTCTGATATGGCTACCGTTCAAAAGACTACTCCCTTGAAGTTAAGCCCGAAAACGGAGGATGGGAGCAAATCGCATGATGTGGAGAGTTCTGAAAAAAGAGCAGGCATTCATGGAGAAATGGTATTGGAAAGCGCTGATTTATTGGAGGAATTTATTATTCAATACAAAGAGGAGGAGAACCAACAGAGTGAGCCGACACCTACGCAGAAGGATTCATTAGAGTCGAAGAAAGGACCTAAGAAACGTTCAAAAGTGTGGTTGtactttataaaaaataaagacgGAAAAAGTGCTACTTGCAAACTTTGCAAAGCGACACTGCGCTGTCTTATTGACTCATCCACTACTAACCTGTTGCGGCACTTGCGCACAAAGCACGATTCTCTTTATGAATACGAGATGAAGGGGAATGTAGACACATCTGTTCCTCAGGACAATGTCACCTTAAAGAGAGCTGATGCGAAGAAATCCGGATCAACCAAACTTTGGATGTATTTTGAAGAAGATGAAAGCCAAACAAGTGCTACTTGCAACTTATGTGGAGCCAAAGTGGAAACGTCTTATCAAAGTACCACTTGCTACATTGGTCATTTGCGCAACAAGCACAGTTCAGCTTACATATCGCTGGGTCTCAAAGCGAATACAGACGAATCTGGTTCTGATATGGCTACCGTTCGAAAGACTACTCCCATAACGAGGGATGGGAGCAAATCGCATGATCTGGAGAGTTCTGAAAAAAGAGCAGACATTCATGGAGAAGTGGTAGTGGAAAGCACTGATTTATTGGaggaattaattattcaatCTGGTGTGGCCGAAGAAGAGGAGAACCAACAGAGTGAACAAACTCCTACGCAGACGGATTTATTAGAGTCGAAGACAGGAACTAAGAAACGTTCAAAAGTTTGGTTGtactttataaaaaataaagaagaaagaagtgcTACTTGTAAACTTTGCCAAGCGACACTGCGCACTCTTAATGCATCATCTACTACTACCCTGTTACGGCACTTGCGCACAAAGCACCATTCACTTTATGAATACGAGATGAAAGGGAATGTAGACACATCTGTTTCTCAGGGCGATGTCACCTTAAAGAGAGCTGATGCGAAGAAATCCGGATCAACGAAACGTTCAAAGGTTTGGATGTATTTTGAAGAGGATGAAAGCCAAACTGGTGCTACTTGCAACTTATGTGGAGCCAAAGTGAAAACGTCTTATCGAACTACCACTTGCTACATAAGTCATTTGCGCAACAAGCACAGTTCAGCTTACATATCGCTGGGCCTCAAGGTGAATACTGACGAAACCGGTTCTGATATGGCTATCGTTCGAAAGACTACTCCCTTGAAGTTAAGCCCGAAAACGGAGGATCAAGCTATTTCTCTTGTTGCAGAGCCAAAAATGAAGTCAAGAGTTTGGTTGTTTTTCACGAAGGATGAGAACGGAACTATAGCAACTTGTCAATTGTGCAGTCATAAGTTGACCTTGAACCGCTATGGAGGCACCACCGCTCTCCGGAAACACATTGAACATAATCACGTTGAGTTTTCCAACTCGCTCGACCGAAACAATAAAGTTGAGAAAAAGATTGTGAATGGAAATGTCTACTATATTTTGAATTAA
- Protein Sequence
- MRGFILGLIKATRVLFIHSGLSKAPFERILKRSEESKLDPFALSLIVSTKSLVWHFFWKDVERGMSTCKVCSLGVKTTGGNTKGMRGHLFSRHPLEGESLRQLEMQKRQKKLEYEAFKVQYVSETHDVESSEKRSGIHGEVESTDLLEELIIQSGVAEEEENQQSEQTPTQTDLLESKTGHKKRSKVWLYFIRNKDEGSATCKLCKATLRILNASPTTNLLRHLRTKHHSLYEYDMKENVDTSVPQDNVTLKRADEKKSDVSKSHDVESSEKRADIRGRMVLESTDLLEELIIQSGLDQEEENQQSEPTPAQADSLESKTGHKKRSLVWVYFIKNKDEGSATCKLCKATLRTPNASSTTNLLRHLRSKHHSLYKYHMKGNVDTSVSQGNITLKRADAKKSGSTKCAKVWMYFVEDESQASATCNLCGAKVKTSYGTTTGYISHLRNKHTSAYISLGLKVKTDETASDMATVQKTTPLKLSPKTEDGSKSHDVESSEKRAGIHGEMVLESADLLEEFIIQYKEEENQQSEPTPTQKDSLESKKGPKKRSKVWLYFIKNKDGKSATCKLCKATLRCLIDSSTTNLLRHLRTKHDSLYEYEMKGNVDTSVPQDNVTLKRADAKKSGSTKLWMYFEEDESQTSATCNLCGAKVETSYQSTTCYIGHLRNKHSSAYISLGLKANTDESGSDMATVRKTTPITRDGSKSHDLESSEKRADIHGEVVVESTDLLEELIIQSGVAEEEENQQSEQTPTQTDLLESKTGTKKRSKVWLYFIKNKEERSATCKLCQATLRTLNASSTTTLLRHLRTKHHSLYEYEMKGNVDTSVSQGDVTLKRADAKKSGSTKRSKVWMYFEEDESQTGATCNLCGAKVKTSYRTTTCYISHLRNKHSSAYISLGLKVNTDETGSDMAIVRKTTPLKLSPKTEDQAISLVAEPKMKSRVWLFFTKDENGTIATCQLCSHKLTLNRYGGTTALRKHIEHNHVEFSNSLDRNNKVEKKIVNGNVYYILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01272771;
- 90% Identity
- iTF_01272771;
- 80% Identity
- iTF_01272771;