Basic Information

Insect: Psococerastis gibbosa
Gene Symbol: -
Assembly: GCA_963971405.1
Location: OZ020490.1:30249647-30256019[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.6 1.6e+04 -3.4 0.0 22 43 110 131 98 133 0.73

2 11 0.055 3.5e+02 1.9 0.0 26 44 170 188 163 193 0.86

3 11 0.025 1.6e+02 3.0 0.0 21 44 221 244 217 248 0.90

4 11 0.8 5.1e+03 -1.8 0.0 22 44 278 300 276 307 0.83

5 11 0.0046 29 5.4 0.0 22 52 309 339 303 340 0.86

6 11 0.051 3.2e+02 2.0 0.1 21 44 336 359 333 367 0.84

7 11 0.0019 12 6.6 0.0 23 44 366 387 362 394 0.87

8 11 0.015 97 3.7 0.0 22 46 457 480 453 488 0.86

9 11 0.029 1.8e+02 2.8 0.0 23 44 555 576 546 583 0.87

10 11 0.025 1.6e+02 3.0 0.1 23 44 611 632 600 638 0.88

11 11 0.0018 12 6.7 0.0 22 46 666 689 661 704 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.6	1.6e+04	-3.4	0.0	22	43	110	131	98	133	0.73
2	11	0.055	3.5e+02	1.9	0.0	26	44	170	188	163	193	0.86
3	11	0.025	1.6e+02	3.0	0.0	21	44	221	244	217	248	0.90
4	11	0.8	5.1e+03	-1.8	0.0	22	44	278	300	276	307	0.83
5	11	0.0046	29	5.4	0.0	22	52	309	339	303	340	0.86
6	11	0.051	3.2e+02	2.0	0.1	21	44	336	359	333	367	0.84
7	11	0.0019	12	6.6	0.0	23	44	366	387	362	394	0.87
8	11	0.015	97	3.7	0.0	22	46	457	480	453	488	0.86
9	11	0.029	1.8e+02	2.8	0.0	23	44	555	576	546	583	0.87
10	11	0.025	1.6e+02	3.0	0.1	23	44	611	632	600	638	0.88
11	11	0.0018	12	6.7	0.0	22	46	666	689	661	704	0.79

Sequence Information

Coding Sequence: ATGGATCTGAGTGATGACATCGTCGTGCATGTGAAGGACGAAGTTGTCAGTTTGTCAGGCAGCCTGGAAGAATTAAGTCAATTTGCTGTTACAAACGATCTGGGTGGAGATAACATCGCAGTTAAAGAAGAAGCAATCAGTTTGTGTGGCAGCTTAGAAGATTTAAGTGAAGTTCCTCCTGATGACGATCACACCGACAATTATGGGGAAATTATGGAAGCCGATGTGTCACCAGATGATCAGGCTAGTGACCCGAATTTCGATTGCAATAAGAAGGGAACCTCGAAAAAGAGAACGTACAAGAGACGTGTTCCAACGAATACGCAAGATAAACCATTCCGGTGCAAGCTTTGTGACAAGAAATTCGTCACGGACATAAATCTACAAAATCATATGCCAACACACACAGGAAATTTTCCATATGAATGTAACGTATGCAAGAAACCGTTCGCGTTAAAAGGTAGCCTCCAAAAACATATGGTAATACACACAGGGGAAAAACTGTTTGAGTGCCCCGTATGTCACAAAACTTATGCCAGAAATGGTAACCTTACGCAACATATGGTAACTCACACGGGCGAGAAACGGTTTCAGTGTACTGTATGTCATAAGAAATTCGCACTTGGTTTCTATCTGAAGTCACATATGATGACGCACACGGGGGAGAAACCTTTCCAATGTACCGTATGTGAAAAGACATTTCCAAGTAAACGGAATTTGAATTACCATATGGCAACCCATACAGGAGGTGGGCAGTTTCAGTGTACTGTATGTGAAAAGGCATTCCCCACTCGCACTAGACTTAAAATACATATGGTAACTCACATGGGCGATAAACCCCATCAGTGCACCCTATGCGACATGGCATATACCTCCAGCGATAGCCTTAAGTCCCATGTGTTGACACATACAGGGGAAAAAGCCCCAAAACCGTTCACGTGTACCGTATGTGATAGGGCATTTTCAAAAAGTGGTAGTTTAAAACAGCATATGTTATTACACTCGGGAGAGAAGCCTTTCAAATGTTGTATATGTGAAATGGCATTTTCCCAAAGAAGTGGCTTGAGCCAGCATATGTTTACTCATGCGGAGGTGAAACCATTCCAGTGTAACATATGTGAGAGGACGTTTTCACAGAGTAGCAATTTTAAGAAACATATGTTAACACATGAAGCCACAACTATTGTGATTCTGGCGACAGATTCGGAGGATAAACAGTTCCATTGTGATAAGGCGTTTGCTATAAAAAGTGACGTTGTTAGACACAAGTTAACACATTCTGGGAATAAACCTTATCAGTGTACCGCGTGTGAGATGGCATTTTCGTTAAACCACGCCCTCAAGTCGCATATGTTAACGCATCTGGACGAAAAACCGTTCATATGTGAAATATGTTCTAAACCGTTCACTAGACAACGTGACGTCACGAGACACATGTTGACGCATTCGGGGAAAAGAGCGTTTATGTGTAGCGTATGTAAGAAAACATTTGCGCATAGTAGCAGCCTTACGGTGCATATGCTGGTACATACATGGAAAGCTGATGGTGTTAAAGATGTGGCAGTACATACCGAGGGGAAACATTTTCAGTGTGAGTTATGCGAGCGGGCGTTTTATCGTCGCAGTGACCTCACTAAACATATGTTTACCCACTCAGGGAGCAAACCATACCAGTGTACCGTATGCGAAGCAACATTTTACCAAAATAACGCTCTTAAGGGACATATTTTAACGCATAAGAAGCAAAAGAAATTGCAGTGTGACATATGTTTGAAGACGTTTTTGAGAAGGAGTGACGTTACCAAACATATGCACACTCATACAGGGAGTACGCCATACCATTGTACCATATGTGATGCGTCTTTCTGTCAAAATAACGCGCTTAAAGGGCATATGTTGACGCATACGAAGCAGAATGAGTTCCAGTGTGATACGTGTGAGAAGATATTCAGTAGGAGATGTGACCTCACTAGACATATTGTAACCCACACAGGGCAGAAGCCCTATCAGTGTACCGTGTGTGAGAAAGCATACACCCAAAGTTGCAACCTGAAGGCGCATATGTTAAAGCATAAAGAGACTGTGATGGGCCACTTCGCTGATAATGGGCTCATAAGTGACGAGTCTGTAGATTCTACTGGAGAAACCATTCTAGCGGATATGTAA
Protein Sequence: MDLSDDIVVHVKDEVVSLSGSLEELSQFAVTNDLGGDNIAVKEEAISLCGSLEDLSEVPPDDDHTDNYGEIMEADVSPDDQASDPNFDCNKKGTSKKRTYKRRVPTNTQDKPFRCKLCDKKFVTDINLQNHMPTHTGNFPYECNVCKKPFALKGSLQKHMVIHTGEKLFECPVCHKTYARNGNLTQHMVTHTGEKRFQCTVCHKKFALGFYLKSHMMTHTGEKPFQCTVCEKTFPSKRNLNYHMATHTGGGQFQCTVCEKAFPTRTRLKIHMVTHMGDKPHQCTLCDMAYTSSDSLKSHVLTHTGEKAPKPFTCTVCDRAFSKSGSLKQHMLLHSGEKPFKCCICEMAFSQRSGLSQHMFTHAEVKPFQCNICERTFSQSSNFKKHMLTHEATTIVILATDSEDKQFHCDKAFAIKSDVVRHKLTHSGNKPYQCTACEMAFSLNHALKSHMLTHLDEKPFICEICSKPFTRQRDVTRHMLTHSGKRAFMCSVCKKTFAHSSSLTVHMLVHTWKADGVKDVAVHTEGKHFQCELCERAFYRRSDLTKHMFTHSGSKPYQCTVCEATFYQNNALKGHILTHKKQKKLQCDICLKTFLRRSDVTKHMHTHTGSTPYHCTICDASFCQNNALKGHMLTHTKQNEFQCDTCEKIFSRRCDLTRHIVTHTGQKPYQCTVCEKAYTQSCNLKAHMLKHKETVMGHFADNGLISDESVDSTGETILADM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01272389;
90% Identity: iTF_01272389;
80% Identity: iTF_01272389;